Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ViNHUV68_RS00440 Genome accession   NZ_CP134975
Coordinates   92156..92857 (+) Length   233 a.a.
NCBI ID   WP_038175426.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 87156..97857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS00425 (ViNHUV68_00840) - 88277..90595 (+) 2319 WP_391088804.1 Tex-like N-terminal domain-containing protein -
  ViNHUV68_RS00430 (ViNHUV68_00850) - 90703..91173 (-) 471 WP_391088806.1 ATP-dependent Lon protease -
  ViNHUV68_RS00435 (ViNHUV68_00860) bioH 91280..92098 (-) 819 WP_038175427.1 pimeloyl-ACP methyl ester esterase BioH -
  ViNHUV68_RS00440 (ViNHUV68_00870) comF 92156..92857 (+) 702 WP_038175426.1 ComF family protein Machinery gene
  ViNHUV68_RS00445 (ViNHUV68_00880) nfuA 92945..93538 (+) 594 WP_051686530.1 Fe-S biogenesis protein NfuA -
  ViNHUV68_RS00450 (ViNHUV68_00890) nudE 93660..94208 (+) 549 WP_038175424.1 ADP compounds hydrolase NudE -
  ViNHUV68_RS00455 (ViNHUV68_00900) cysQ 94253..95080 (+) 828 WP_038175423.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ViNHUV68_RS00460 (ViNHUV68_00910) recG 95197..97275 (-) 2079 WP_391088809.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26491.91 Da        Isoelectric Point: 8.6129

>NTDB_id=884369 ViNHUV68_RS00440 WP_038175426.1 92156..92857(+) (comF) [Vibrio sp. NH-UV-68]
MLAQTINKYIADLLPMQCEVCQLLLAADEQQLGVCATCQHYFSPVPRCQRCGLMTVAEQVECGQCLKQPPYWHKLYCVGD
YQAPLSSYVHLLKYERQFWHARKLAMLLAPRIDQPADLITFVPLHWRRYLQRGFNQSELLAQSLAKQLAVPQQGVFRRTR
ATAQQQGLDKHQRMNNIHNAFALKSLPNVKRVAIVDDVLTTGSTVQHLCKLLLDAGVKSVDIYCICRTPEPAS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=884369 ViNHUV68_RS00440 WP_038175426.1 92156..92857(+) (comF) [Vibrio sp. NH-UV-68]
ATGTTAGCGCAAACAATCAACAAATACATCGCGGACCTGTTGCCGATGCAGTGTGAGGTGTGTCAATTACTCTTGGCGGC
CGACGAGCAGCAACTAGGGGTTTGCGCTACGTGTCAACACTATTTTTCACCAGTGCCGCGTTGCCAACGTTGCGGCTTAA
TGACGGTGGCTGAGCAAGTTGAGTGCGGACAGTGTTTAAAGCAGCCACCATACTGGCATAAGTTGTATTGTGTTGGTGAT
TACCAAGCGCCACTCTCTTCTTACGTGCATTTACTCAAGTACGAACGGCAATTCTGGCACGCCCGTAAGCTTGCGATGCT
ATTGGCACCACGTATCGACCAACCTGCCGATTTGATCACCTTTGTGCCCTTGCATTGGCGGCGTTATTTACAGCGAGGAT
TTAATCAAAGTGAGTTGCTTGCGCAGTCGTTAGCCAAACAACTTGCTGTGCCCCAGCAAGGCGTGTTTCGCCGTACTCGT
GCAACTGCTCAGCAGCAAGGGTTAGACAAACACCAACGGATGAACAACATCCACAACGCTTTCGCATTGAAATCATTGCC
AAATGTGAAGCGGGTAGCGATTGTTGATGATGTTTTAACCACAGGAAGTACCGTGCAGCATTTGTGCAAATTACTGCTTG
ATGCCGGGGTAAAAAGCGTTGATATTTATTGTATTTGTCGTACTCCTGAACCTGCGAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.897

99.571

0.567
  comF Vibrio campbellii strain DS40M4

45.417

100

0.468