Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   RJG54_RS03965 Genome accession   NZ_CP134846
Coordinates   746636..748477 (-) Length   613 a.a.
NCBI ID   WP_390838952.1    Uniprot ID   A0AAU0P025
Organism   Arcobacter cryaerophilus gv. pseudocryaerophilus strain LEO 107     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 741636..753477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJG54_RS03945 (RJG54_03950) - 742030..743139 (+) 1110 WP_390856848.1 restriction endonuclease subunit S -
  RJG54_RS03950 (RJG54_03955) - 743170..744246 (-) 1077 WP_390856850.1 MalY/PatB family protein -
  RJG54_RS03955 (RJG54_03960) - 744455..745582 (+) 1128 WP_390838950.1 iron-containing alcohol dehydrogenase -
  RJG54_RS03960 - 745613..746691 (-) 1079 Protein_762 alanine racemase -
  RJG54_RS03965 (RJG54_03975) uvrC 746636..748477 (-) 1842 WP_390838952.1 excinuclease ABC subunit UvrC Machinery gene
  RJG54_RS03970 (RJG54_03980) - 748662..751814 (-) 3153 WP_390838953.1 efflux RND transporter permease subunit -
  RJG54_RS03975 (RJG54_03985) - 751817..752854 (-) 1038 WP_390838954.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71309.53 Da        Isoelectric Point: 9.1839

>NTDB_id=884083 RJG54_RS03965 WP_390838952.1 746636..748477(-) (uvrC) [Arcobacter cryaerophilus gv. pseudocryaerophilus strain LEO 107]
MNLEEKLKELPNDSGVYQYFDENGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMISETTFVEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIYVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
IKGKSACLFYQIGKCKAPCEQKITKEEYKKILDEALSYIYNKSKLLSKLKEKMKIYSDDFRFEDALNLRDRVKTIEKSEI
KTGIDLATNEDLDIFAIKSASKKAVIVRMFIRDGKLASSNYDFIKINDDLEFDLNEAYKRAIVNYYSNELPIIPKEIIVA
DEILDLDDIEEFLYKRFNKKIKVINPKIDKKASIVKIALNNCDELLRIEASKNQTTIYEELKELFCLQTTPSLIESFDNS
HLMGQATVGAMIVWNENLGSFDKKAFRHYNLESKDEYSQMREMLIRRVESFSKNPAPDLWIIDGGETLLKLAFDIVQSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFRKNGEYKSLNLLTSDKRLQFIQRQRDEAHRFAISFHKKQKRKEDKEISFL
QISGIGEAKIKKLLLYFGEFEKIKNASLEELKAVLNEVDSKNIFDYFRKEENG

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=884083 RJG54_RS03965 WP_390838952.1 746636..748477(-) (uvrC) [Arcobacter cryaerophilus gv. pseudocryaerophilus strain LEO 107]
ATGAATTTAGAAGAGAAATTAAAAGAGTTACCAAATGATTCTGGTGTTTATCAATATTTTGATGAAAACGGTCATTTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTAAAATCTTATTTCAAATTTACTCCAAAACTCTTACCTGCTGATA
AACTAAGTCCACGAATATATAAAATGATTAGTGAAACTACTTTTGTAGAGTGGATTGTTGTTCCAAATGAACATGATGCT
TTAATACTTGAAAACTCTTTAATCAAACAGCTAAAACCAAAATACAATGTACTTTTAAGAGATGATAAAACCTATCCATA
TATTTATGTTGATTTAAATGAAGATTTTCCAAGACTTGAAATAACAAGAAAAATAGAGAAAGGTAAAAATATAAAATATT
TTGGTCCATACTCAAGTGGTGCAAAAGATATGTTAGATAGCATATATGAAATAGTTCCATTGGTGCAAAAAAAATCTTGT
ATAAAAGGAAAAAGTGCTTGTCTATTTTACCAAATAGGAAAATGTAAAGCTCCTTGTGAACAAAAAATAACAAAAGAAGA
GTATAAAAAAATTTTAGATGAAGCTTTAAGCTATATATACAATAAATCAAAACTTTTATCAAAACTAAAAGAGAAGATGA
AAATATATTCAGATGATTTTCGTTTTGAAGATGCTTTAAATTTAAGAGATAGAGTAAAAACTATTGAAAAATCTGAAATT
AAAACAGGAATAGATTTAGCAACAAATGAAGATTTAGATATATTTGCTATAAAATCTGCTAGTAAAAAAGCTGTAATTGT
AAGAATGTTTATAAGAGATGGAAAACTTGCATCTTCAAATTATGATTTTATAAAGATAAATGATGATTTAGAGTTTGATT
TAAATGAAGCATATAAAAGAGCAATTGTAAACTACTACTCAAATGAACTTCCAATTATCCCAAAAGAGATTATTGTAGCT
GATGAAATTTTGGATTTAGATGACATTGAAGAGTTTTTATATAAAAGATTTAATAAAAAAATAAAAGTAATAAATCCAAA
AATAGATAAAAAAGCTAGTATTGTAAAAATTGCATTAAACAACTGTGATGAACTTCTACGAATTGAAGCTTCAAAAAATC
AAACAACTATATATGAAGAGTTAAAAGAACTATTTTGCCTACAAACAACTCCTAGCTTAATAGAAAGTTTTGACAATTCT
CATTTGATGGGACAAGCAACAGTTGGAGCTATGATTGTTTGGAATGAAAATTTAGGCTCTTTTGACAAAAAAGCTTTTAG
ACACTACAACCTTGAATCAAAAGATGAATATTCACAAATGAGAGAGATGTTAATAAGAAGAGTTGAAAGCTTTTCAAAAA
ATCCTGCTCCTGATTTATGGATTATTGATGGTGGAGAAACTTTGCTAAAACTAGCATTTGATATAGTACAAAGTATTGGG
GTAAATTTAGATATTATTGCAATTTCAAAACAAAAAGTAGATGCCAAAGCATATAGAGCAAAAGGAAATGCGAAAGATAT
AGTCCATTTTAGAAAAAATGGTGAATACAAAAGCTTAAATCTTCTTACAAGTGATAAAAGATTACAGTTTATTCAAAGAC
AAAGAGATGAAGCCCATAGATTTGCTATAAGTTTTCATAAAAAACAAAAAAGAAAAGAGGATAAAGAGATATCTTTTTTA
CAAATAAGTGGAATTGGTGAAGCAAAAATTAAAAAACTTCTTTTGTATTTTGGAGAGTTTGAAAAGATAAAAAATGCAAG
TTTAGAAGAGTTAAAAGCTGTTTTAAATGAAGTTGATTCAAAAAATATATTTGATTATTTTAGAAAGGAAGAGAATGGCT
AG

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-543)

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.846

97.227

0.504