Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   M9H32_RS06160 Genome accession   NZ_CP134832
Coordinates   1262045..1264495 (+) Length   816 a.a.
NCBI ID   WP_049427512.1    Uniprot ID   -
Organism   Staphylococcus capitis strain ADQHB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1257045..1269495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H32_RS06135 (M9H32_06135) - 1257562..1257702 (+) 141 WP_002436115.1 SAS049 family protein -
  M9H32_RS06140 (M9H32_06140) - 1257756..1258751 (-) 996 WP_023350159.1 LLM class flavin-dependent oxidoreductase -
  M9H32_RS06145 (M9H32_06145) - 1259012..1260154 (+) 1143 WP_331245646.1 cysteine desulfurase family protein -
  M9H32_RS06150 (M9H32_06150) mnmA 1260154..1261272 (+) 1119 WP_049427509.1 tRNA 2-thiouridine(34) synthase MnmA -
  M9H32_RS06155 (M9H32_06155) - 1261375..1262043 (+) 669 WP_049427510.1 tetratricopeptide repeat protein -
  M9H32_RS06160 (M9H32_06160) recD2 1262045..1264495 (+) 2451 WP_049427512.1 ATP-dependent RecD-like DNA helicase Machinery gene
  M9H32_RS06165 (M9H32_06165) alaS 1264835..1267465 (+) 2631 WP_049427514.1 alanine--tRNA ligase -
  M9H32_RS06170 (M9H32_06170) - 1267529..1267789 (+) 261 WP_002435994.1 IreB family regulatory phosphoprotein -
  M9H32_RS06175 (M9H32_06175) ruvX 1267791..1268219 (+) 429 WP_002435990.1 Holliday junction resolvase RuvX -
  M9H32_RS06180 (M9H32_06180) - 1268233..1268553 (+) 321 WP_002436074.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 816 a.a.        Molecular weight: 91826.22 Da        Isoelectric Point: 4.6542

>NTDB_id=883970 M9H32_RS06160 WP_049427512.1 1262045..1264495(+) (recD2) [Staphylococcus capitis strain ADQHB]
MSDPTLFDKSMIKGTVDAILFQNNDNFYTVLKVDTIETNESFDSMPTVVGFLPNVVEGDVYTFKGQIVDHPRYGKQLKAE
TFEKELPQTKDAIISYLSSDLFKGIGKKTAQNIVNALGENAINDILNNPEVLEKVPSLPKKKQKQIAEQISSNQESEKIM
IRLHDLGFGPKLSMAIYQFYMGDTLKILDENPYQLVYDIKGIGFNKADQLARNIGIAADSEERLKAGLLYTLEEECIKQG
HTYLPNSYVIESTQTMLNDSSEVVISTKMLEQKIEQLSEEKKLIQSEEQVSIPSLYYSELKSVQNLYRIQTNNKKLKEIE
QSDLQMHIGEIESLNQVNYATSQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLA
APTGRASKRLQESTGLEAMTIHRLIGWNQETQPEDILNNEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQIVFVGDEDQ
LPSVGPGQVFKDLIDSKRIPRVNLTEVYRQQDGSSIVDLAHRMKVGEPIDITQRFHDRSFINCTSDQIPDVVDKVVKSAV
SKGYNMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKEKDSREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALNKDVIVVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVLL
GDPQAFDIGLKTKGQERLTQLNHLLKSYFGDEQEVIGSSGHSSVNSTEKHDTTQTEEESATTDAPQNDIVLSETTIFKID
PMINMGEMTPYDFAEH

Nucleotide


Download         Length: 2451 bp        

>NTDB_id=883970 M9H32_RS06160 WP_049427512.1 1262045..1264495(+) (recD2) [Staphylococcus capitis strain ADQHB]
ATGTCTGACCCTACACTTTTTGATAAATCAATGATCAAAGGTACTGTAGATGCTATATTATTTCAAAATAATGATAATTT
CTATACAGTTCTTAAAGTAGACACGATTGAAACGAATGAGTCCTTTGATAGCATGCCAACTGTTGTAGGGTTTCTTCCAA
ATGTAGTTGAAGGAGACGTCTATACGTTTAAAGGGCAAATTGTCGACCACCCACGTTATGGTAAACAATTAAAAGCTGAA
ACTTTTGAAAAGGAACTTCCACAAACCAAAGATGCAATTATTAGTTATTTATCTAGTGATTTATTTAAAGGAATAGGAAA
GAAAACTGCTCAAAATATTGTTAATGCATTAGGCGAGAATGCAATCAATGATATATTAAATAATCCTGAAGTGTTAGAAA
AAGTCCCTAGTTTACCTAAGAAAAAGCAAAAGCAGATTGCAGAACAAATAAGTTCGAATCAAGAATCAGAAAAAATAATG
ATTCGGTTACATGATTTAGGATTTGGTCCTAAACTTTCAATGGCAATTTATCAGTTTTATATGGGAGATACATTGAAAAT
ACTAGACGAAAATCCTTATCAACTCGTTTATGATATTAAAGGAATAGGTTTTAATAAAGCTGATCAATTAGCGCGAAACA
TTGGTATTGCAGCAGATTCTGAAGAGCGTTTGAAAGCAGGATTGCTTTATACACTTGAAGAAGAATGTATCAAACAAGGA
CATACATATTTGCCTAATTCATATGTGATTGAATCAACGCAAACTATGCTTAACGATAGCTCTGAAGTTGTAATTTCTAC
TAAAATGCTAGAGCAAAAGATTGAGCAACTCTCTGAAGAGAAAAAATTGATTCAAAGCGAAGAACAAGTTTCAATTCCAA
GTTTGTATTATTCGGAATTAAAGAGTGTTCAAAATCTTTATCGTATTCAAACTAATAATAAAAAGTTAAAAGAAATCGAA
CAATCAGATTTACAAATGCATATTGGTGAAATTGAGTCACTAAATCAAGTAAATTATGCAACTTCACAGAAAGAAGCTTT
AGAGACGGCAATCAATTCAAAAGTGATGCTTCTTACTGGTGGTCCCGGTACTGGTAAAACTACTGTCATTAAAGGCATCG
TAGAGCTTTATGCAGAAATACATGGATTATCATTAGATTATGATGATTACAACGAGGATGATTATCCAGTTGTACTTGCT
GCACCAACTGGACGCGCATCTAAAAGACTTCAGGAATCTACTGGATTAGAAGCAATGACAATTCACCGTTTAATAGGTTG
GAATCAAGAAACACAACCTGAAGATATTTTAAATAATGAAATTAATGCACGGCTTATCATTATAGATGAAATGTCTATGG
TAGATACATGGTTATTTCATCAATTTTTAAGTGCTGTTCCATTAGATGCTCAAATTGTATTTGTAGGAGATGAAGACCAA
CTCCCTTCAGTTGGACCGGGTCAAGTGTTTAAAGACCTCATTGATTCTAAAAGAATTCCGCGTGTTAATCTTACGGAAGT
GTATCGCCAACAGGATGGCTCAAGTATTGTTGATTTAGCACATCGTATGAAAGTAGGCGAACCCATAGATATAACTCAAC
GTTTTCACGATCGCAGTTTCATTAACTGTACTTCAGACCAAATACCTGATGTAGTAGATAAAGTTGTTAAAAGTGCAGTG
AGTAAAGGGTATAATATGAGTGATATTCAAGTCCTTGCTCCTATGTATAAAGGTAATGCAGGAATAAAACGTCTCAATCA
AGTATTACAATCTATTTTAAATCCAAAGGAAAAAGATAGTCGTGAAATTGAATTCGGAGATGTTGTATTTCGTAAAGGAG
ATAAAGTACTTCAGTTGGTCAATAGACCTAATGACAATATATTTAATGGTGATATTGGTGTAATTGTAGGCATATTTTGG
GCTAAAGAAAATGCTCTTAATAAAGATGTAATAGTAGTAGATTTTGAAGGAAATGAAATTACCTTTACTCGACAAGACTT
ACTTGAACTTACTCATGCTTATTGTACATCTATTCATAAATCTCAAGGGTCAGAATTTCCAATTGTTATTATGCCTATAG
TTAAACAATACTTTCGTATGTTACAAAGACCTATCCTTTATACGGGTCTGACCCGTGCTAAGCAATCACTTGTTTTACTT
GGGGATCCCCAAGCATTTGATATAGGACTGAAGACAAAAGGCCAAGAACGTTTAACTCAGTTGAATCACTTATTAAAATC
TTATTTTGGTGATGAGCAAGAAGTTATAGGTAGTTCAGGTCATTCATCTGTAAATAGCACTGAAAAACATGATACTACAC
AAACTGAAGAAGAGAGCGCAACAACTGACGCACCACAAAATGACATTGTTCTTAGTGAAACCACTATATTTAAAATTGAT
CCTATGATTAATATGGGAGAAATGACGCCTTACGATTTTGCCGAGCATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-720)

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.017

99.755

0.489