Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RI132_RS00755 Genome accession   NZ_CP134783
Coordinates   153289..153999 (-) Length   236 a.a.
NCBI ID   WP_165386730.1    Uniprot ID   -
Organism   Vibrio vulnificus strain GCU-01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 148289..158999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS00725 (RI132_00725) gspL 148475..149674 (+) 1200 WP_043920924.1 type II secretion system protein GspL -
  RI132_RS00730 (RI132_00730) - 149682..150173 (+) 492 WP_011078935.1 type II secretion system protein M -
  RI132_RS00735 (RI132_00735) - 150175..150936 (+) 762 WP_011078934.1 type II secretion system protein N -
  RI132_RS00740 (RI132_00740) cysQ 151062..151889 (-) 828 WP_072616306.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  RI132_RS00745 (RI132_00745) nudE 151904..152458 (-) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  RI132_RS00750 (RI132_00750) nfuA 152574..153158 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  RI132_RS00755 (RI132_00755) comF 153289..153999 (-) 711 WP_165386730.1 phosphoribosyltransferase family protein Machinery gene
  RI132_RS00760 (RI132_00760) bioH 154088..154855 (+) 768 WP_130191384.1 pimeloyl-ACP methyl ester esterase BioH -
  RI132_RS00765 (RI132_00765) - 154993..155463 (+) 471 WP_011078928.1 hypothetical protein -
  RI132_RS00770 (RI132_00770) - 155546..157870 (-) 2325 WP_130191383.1 Tex family protein -
  RI132_RS00775 (RI132_00775) greB 158106..158588 (+) 483 WP_013572566.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27250.98 Da        Isoelectric Point: 9.6772

>NTDB_id=883714 RI132_RS00755 WP_165386730.1 153289..153999(-) (comF) [Vibrio vulnificus strain GCU-01]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCQHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHVIPTHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=883714 RI132_RS00755 WP_165386730.1 153289..153999(-) (comF) [Vibrio vulnificus strain GCU-01]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGCCATCTGTGCGGCTTACCGATGAATCA
CGACCATCACCCGCTTTGGTGCCAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTCTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCGCCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTATTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAACGCAACTTAGCGGGTGCCTTTCGCCTCAATCGCTCGGC
TTTACCCCATGTGATTCCCACGCACGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475