Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RND59_RS07390 Genome accession   NZ_CP134780
Coordinates   1588907..1589608 (-) Length   233 a.a.
NCBI ID   WP_311846508.1    Uniprot ID   -
Organism   Vibrio ruber strain HNIBRBA4764     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1583907..1594608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND59_RS07360 (RND59_07360) gspL 1584110..1585321 (+) 1212 WP_311846505.1 type II secretion system protein GspL -
  RND59_RS07365 (RND59_07365) - 1585331..1585822 (+) 492 WP_311846506.1 type II secretion system protein M -
  RND59_RS07370 (RND59_07370) - 1585828..1586598 (+) 771 WP_139344106.1 type II secretion system protein N -
  RND59_RS07375 (RND59_07375) cysQ 1586674..1587495 (-) 822 WP_311846507.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  RND59_RS07380 (RND59_07380) nudE 1587492..1588070 (-) 579 WP_077336825.1 ADP compounds hydrolase NudE -
  RND59_RS07385 (RND59_07385) nfuA 1588236..1588823 (-) 588 WP_077336824.1 Fe-S biogenesis protein NfuA -
  RND59_RS07390 (RND59_07390) comF 1588907..1589608 (-) 702 WP_311846508.1 phosphoribosyltransferase family protein Machinery gene
  RND59_RS07395 (RND59_07395) bioH 1589699..1590463 (+) 765 WP_311846628.1 pimeloyl-ACP methyl ester esterase BioH -
  RND59_RS07400 (RND59_07400) - 1590615..1591091 (+) 477 WP_311846509.1 ATP-dependent Lon protease -
  RND59_RS07405 (RND59_07405) - 1591216..1593528 (-) 2313 WP_311846510.1 Tex family protein -
  RND59_RS07410 (RND59_07410) greB 1593553..1594032 (-) 480 WP_077336821.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26773.19 Da        Isoelectric Point: 8.7999

>NTDB_id=883667 RND59_RS07390 WP_311846508.1 1588907..1589608(-) (comF) [Vibrio ruber strain HNIBRBA4764]
MLLHALQHTFRRHIPRLCTLCELPLTAWEHHWCTSCRTCFQSTSRCTRCGLAMPFPTSRCGACLQSPPLWNALYCLGDYA
YPLAPMIHQIKYGRQFWLIPPLATLLAQVIPSPAPVLLSVPLHWRRYLYRGFNQSDLLAHHLSRALAVSSQTRLLQRIRP
TPPQEGLHKHEREQNLRRAFTLRNRPSATHVAIVDDVVTTGSTVSQLCQLLLEVGVEYIDIYCLCRTPEYHNQ

Nucleotide


Download         Length: 702 bp        

>NTDB_id=883667 RND59_RS07390 WP_311846508.1 1588907..1589608(-) (comF) [Vibrio ruber strain HNIBRBA4764]
ATGTTATTACACGCTCTTCAACACACTTTTCGTCGCCATATTCCCCGATTATGCACACTCTGTGAGCTGCCGTTAACCGC
ATGGGAACATCACTGGTGTACCAGCTGCCGAACCTGTTTTCAATCAACATCCCGTTGTACTCGCTGTGGTCTGGCGATGC
CATTTCCCACCAGCCGGTGCGGGGCTTGTCTTCAGTCTCCGCCGCTTTGGAATGCCCTCTATTGTCTCGGGGATTATGCC
TATCCGTTAGCACCGATGATCCATCAAATTAAATACGGGCGGCAGTTCTGGCTCATCCCGCCCCTTGCAACACTTTTGGC
ACAAGTCATTCCCTCCCCGGCACCAGTCTTGCTCTCAGTTCCCCTTCACTGGCGACGTTATCTTTACCGCGGGTTTAACC
AGAGTGATTTACTGGCTCATCATCTCAGCCGGGCATTAGCAGTCTCCAGTCAGACCAGGCTTTTACAGCGAATTCGTCCG
ACACCGCCGCAAGAAGGGCTACATAAACATGAAAGAGAACAGAACCTGAGAAGAGCGTTTACGTTACGTAACCGTCCCTC
AGCCACACATGTAGCAATCGTTGACGATGTCGTGACAACCGGCAGTACCGTCAGTCAATTATGCCAATTATTGCTTGAAG
TTGGCGTCGAATACATCGATATTTATTGCTTATGCAGAACTCCTGAATATCACAATCAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(171-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

53.478

98.712

0.528
  comF Vibrio campbellii strain DS40M4

48.305

100

0.489