Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RNI18_RS02980 Genome accession   NZ_CP134775
Coordinates   635152..635931 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain KB21     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 630152..640931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNI18_RS02950 (RNI18_02950) fliH 630196..630951 (-) 756 WP_014305003.1 flagellar assembly protein FliH -
  RNI18_RS02955 (RNI18_02955) fliG 630944..631960 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  RNI18_RS02960 (RNI18_02960) fliF 631973..633583 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  RNI18_RS02965 (RNI18_02965) fliE 633626..633946 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  RNI18_RS02970 (RNI18_02970) flgC 633957..634409 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  RNI18_RS02975 (RNI18_02975) flgB 634409..634798 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  RNI18_RS02980 (RNI18_02980) codY 635152..635931 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RNI18_RS02985 (RNI18_02985) hslU 635969..637372 (-) 1404 WP_003154265.1 HslU--HslV peptidase ATPase subunit -
  RNI18_RS02990 (RNI18_02990) hslV 637389..637934 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  RNI18_RS02995 (RNI18_02995) xerC 637950..638867 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  RNI18_RS03000 (RNI18_03000) trmFO 638937..640244 (-) 1308 WP_072588509.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=883553 RNI18_RS02980 WP_003154263.1 635152..635931(-) (codY) [Bacillus velezensis strain KB21]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=883553 RNI18_RS02980 WP_003154263.1 635152..635931(-) (codY) [Bacillus velezensis strain KB21]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471