Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RJY17_RS19405 Genome accession   NZ_CP134692
Coordinates   3791252..3792031 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain B5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3786252..3797031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJY17_RS19385 (RJY17_19385) trmFO 3786939..3788246 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RJY17_RS19390 (RJY17_19390) xerC 3788316..3789233 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  RJY17_RS19395 (RJY17_19395) hslV 3789249..3789794 (+) 546 WP_241458200.1 ATP-dependent protease subunit HslV -
  RJY17_RS19400 (RJY17_19400) hslU 3789811..3791214 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  RJY17_RS19405 (RJY17_19405) codY 3791252..3792031 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RJY17_RS19410 (RJY17_19410) flgB 3792385..3792774 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  RJY17_RS19415 (RJY17_19415) flgC 3792774..3793226 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  RJY17_RS19420 (RJY17_19420) fliE 3793237..3793557 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  RJY17_RS19425 (RJY17_19425) fliF 3793600..3795210 (+) 1611 WP_199022520.1 flagellar basal-body MS-ring/collar protein FliF -
  RJY17_RS19430 (RJY17_19430) fliG 3795223..3796239 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  RJY17_RS19435 (RJY17_19435) fliH 3796232..3796987 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=882923 RJY17_RS19405 WP_003154263.1 3791252..3792031(+) (codY) [Bacillus velezensis strain B5]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=882923 RJY17_RS19405 WP_003154263.1 3791252..3792031(+) (codY) [Bacillus velezensis strain B5]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCTTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471