Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RHP76_RS10165 Genome accession   NZ_CP134622
Coordinates   2214771..2215424 (+) Length   217 a.a.
NCBI ID   WP_311230096.1    Uniprot ID   -
Organism   Chryseobacterium sp. SG20098     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2209771..2220424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP76_RS10150 (RHP76_10150) aceA 2209848..2211128 (-) 1281 WP_311230094.1 isocitrate lyase -
  RHP76_RS10155 (RHP76_10155) aceB 2211243..2212817 (-) 1575 WP_311230095.1 malate synthase A -
  RHP76_RS10160 (RHP76_10160) - 2212946..2214424 (+) 1479 WP_062676148.1 helix-turn-helix domain-containing protein -
  RHP76_RS10165 (RHP76_10165) comF 2214771..2215424 (+) 654 WP_311230096.1 ComF family protein Machinery gene
  RHP76_RS10170 (RHP76_10170) - 2215574..2216260 (+) 687 WP_311230097.1 alpha/beta hydrolase -
  RHP76_RS10175 (RHP76_10175) upp 2216262..2216912 (-) 651 WP_062676151.1 uracil phosphoribosyltransferase -
  RHP76_RS10180 (RHP76_10180) der 2217067..2218377 (-) 1311 WP_062676152.1 ribosome biogenesis GTPase Der -
  RHP76_RS10190 (RHP76_10190) - 2218960..2219490 (-) 531 WP_311230098.1 antirestriction protein ArdA -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25359.20 Da        Isoelectric Point: 6.7148

>NTDB_id=882471 RHP76_RS10165 WP_311230096.1 2214771..2215424(+) (comF) [Chryseobacterium sp. SG20098]
MILDILFPNRCIHCNTIIDPELLVCGLCFSQIHFTHYNYFENNPVKEKCSLFFPVENAFSLIQFEEESLSRQIIHELKYR
SRERIGKILAEWMIDRLDFRDDHPDLLVTVPLHPKKLRERGYNQLHLFTETLSEFYDIPFDHELIKRNHYSKAQALKDKK
HRLKTTNTFSVTQPVSGKHILLIDDVFTTGNTVSSVAWEILNAGDNKVSVLVMAVDI

Nucleotide


Download         Length: 654 bp        

>NTDB_id=882471 RHP76_RS10165 WP_311230096.1 2214771..2215424(+) (comF) [Chryseobacterium sp. SG20098]
ATGATATTAGATATATTGTTTCCCAACCGCTGCATCCACTGCAACACAATCATTGATCCAGAACTATTGGTTTGTGGCCT
TTGTTTCAGCCAGATTCATTTTACCCATTACAATTATTTTGAAAATAATCCAGTCAAGGAAAAATGCAGTTTATTTTTTC
CGGTTGAAAATGCGTTTTCTTTAATTCAGTTTGAAGAGGAAAGTTTAAGCCGGCAGATTATCCATGAACTGAAATACAGA
AGCAGGGAAAGAATAGGAAAGATTCTTGCAGAGTGGATGATAGATCGTTTGGATTTTAGAGATGACCATCCTGATCTTTT
AGTAACTGTACCACTCCATCCAAAGAAATTAAGAGAACGGGGATATAATCAGCTTCATTTATTCACAGAAACATTATCAG
AATTTTATGATATTCCGTTTGATCATGAATTAATCAAAAGAAATCATTATTCCAAAGCTCAGGCTTTAAAAGACAAAAAA
CACAGGCTGAAGACCACTAATACATTTTCAGTCACCCAACCTGTTTCCGGAAAGCATATCCTCCTGATTGATGATGTTTT
TACTACAGGAAATACTGTTTCATCGGTTGCGTGGGAGATTTTAAATGCTGGTGACAATAAAGTAAGTGTATTGGTGATGG
CTGTGGATATTTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

53.704

99.539

0.535