Detailed information NTG0882262

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: RLT86_RS08225
• Genome accession: NZ_CP134601
• Coordinates: 1717203..1717904 (+)
• Length: 233 a.a.
• NCBI ID: WP_004747380.1
• Uniprot ID: A0A9E9PDK8
• Organism: Acinetobacter baumannii strain XH1022
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1712203..1722904

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RLT86_RS08190 (RLT86_08200)	kdsB	1712726..1713487 (+)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
RLT86_RS08195 (RLT86_08205)	-	1713499..1714479 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
RLT86_RS08200 (RLT86_08210)	-	1714491..1714832 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
RLT86_RS08205 (RLT86_08215)	-	1714850..1715623 (+)	774	WP_000497302.1	TatD family hydrolase	-
RLT86_RS08210 (RLT86_08220)	-	1715661..1716269 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
RLT86_RS08215 (RLT86_08225)	-	1716279..1716833 (+)	555	WP_005128793.1	type II secretion system protein	-
RLT86_RS08220 (RLT86_08230)	xcpV	1716823..1717203 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
RLT86_RS08225 (RLT86_08235)	xcpW	1717203..1717904 (+)	702	WP_004747380.1	type II secretion system minor pseudopilin GspJ	Machinery gene
RLT86_RS08230 (RLT86_08240)	gspK	1717904..1718863 (+)	960	WP_005128789.1	type II secretion system minor pseudopilin GspK	-
RLT86_RS08235 (RLT86_08245)	-	1719093..1719689 (+)	597	WP_000908452.1	6-carboxytetrahydropterin synthase	-
RLT86_RS08240 (RLT86_08250)	ung	1719740..1720453 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
RLT86_RS08245 (RLT86_08255)	-	1720450..1721574 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
RLT86_RS08250 (RLT86_08260)	tadA	1721581..1722084 (+)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
RLT86_RS08255 (RLT86_08265)	-	1722154..1722597 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26629.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=882262 RLT86_RS08225 WP_004747380.1 1717203..1717904(+) (xcpW) [Acinetobacter baumannii strain XH1022]
MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=882262 RLT86_RS08225 WP_004747380.1 1717203..1717904(+) (xcpW) [Acinetobacter baumannii strain XH1022]
ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996