NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	RKQ50_RS08210	Genome accession	NZ_CP134596
Coordinates	1763811..1764512 (+)	Length	233 a.a.
NCBI ID	WP_000594589.1	Uniprot ID	A0A9P3CZ31
Organism	Acinetobacter baumannii strain XH1017
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1758811..1769512

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ50_RS08175 (RKQ50_08185)	kdsB	1759334..1760095 (+)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
RKQ50_RS08180 (RKQ50_08190)	-	1760107..1761087 (+)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
RKQ50_RS08185 (RKQ50_08195)	-	1761099..1761440 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
RKQ50_RS08190 (RKQ50_08200)	-	1761458..1762231 (+)	774	WP_000497298.1	TatD family hydrolase	-
RKQ50_RS08195 (RKQ50_08205)	-	1762269..1762877 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
RKQ50_RS08200 (RKQ50_08210)	-	1762887..1763441 (+)	555	WP_000841373.1	type II secretion system protein	-
RKQ50_RS08205 (RKQ50_08215)	xcpV	1763431..1763811 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
RKQ50_RS08210 (RKQ50_08220)	xcpW	1763811..1764512 (+)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
RKQ50_RS08215 (RKQ50_08225)	gspK	1764512..1765471 (+)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
RKQ50_RS08220 (RKQ50_08230)	-	1765702..1766298 (+)	597	WP_000908452.1	6-carboxytetrahydropterin synthase	-
RKQ50_RS08225 (RKQ50_08235)	ung	1766349..1767062 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
RKQ50_RS08230 (RKQ50_08240)	-	1767059..1768183 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
RKQ50_RS08235 (RKQ50_08245)	tadA	1768190..1768693 (+)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
RKQ50_RS08240 (RKQ50_08250)	-	1768763..1769206 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26639.58 Da Isoelectric Point: 9.3468

                                >NTDB_id=882120 RKQ50_RS08210 WP_000594589.1 1763811..1764512(+) (xcpW) [Acinetobacter baumannii strain XH1017]

MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=882120 RKQ50_RS08210 WP_000594589.1 1763811..1764512(+) (xcpW) [Acinetobacter baumannii strain XH1017]

ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996

Detailed information NTG0882120