Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RKQ55_RS01600 Genome accession   NZ_CP134586
Coordinates   346138..346779 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain XH1026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341138..351779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS01580 (RKQ55_01585) - 341186..341518 (+) 333 WP_000169602.1 hypothetical protein -
  RKQ55_RS01585 (RKQ55_01590) - 341521..342345 (+) 825 WP_270900989.1 putative RNA methyltransferase -
  RKQ55_RS01590 (RKQ55_01595) ponA 342363..344918 (-) 2556 WP_270900988.1 penicillin-binding protein PBP1a -
  RKQ55_RS01595 (RKQ55_01600) pilM 345080..346138 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RKQ55_RS01600 (RKQ55_01605) pilN 346138..346779 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  RKQ55_RS01605 (RKQ55_01610) pilO 346776..347516 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  RKQ55_RS01610 (RKQ55_01615) pilP 347527..348054 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RKQ55_RS01615 (RKQ55_01620) pilQ 348122..350287 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RKQ55_RS01620 (RKQ55_01625) aroK 350299..350868 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=881863 RKQ55_RS01600 WP_000201227.1 346138..346779(+) (pilN) [Acinetobacter baumannii strain XH1026]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=881863 RKQ55_RS01600 WP_000201227.1 346138..346779(+) (pilN) [Acinetobacter baumannii strain XH1026]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGGCTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709