Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   RKQ56_RS01580 Genome accession   NZ_CP134583
Coordinates   341915..342340 (+) Length   141 a.a.
NCBI ID   WP_032030057.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1032     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336915..347340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ56_RS01570 (RKQ56_01575) pilY1 337569..341423 (+) 3855 WP_032030056.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ56_RS01575 (RKQ56_01580) pilY2 341436..341918 (+) 483 WP_001046418.1 type IV pilin protein Machinery gene
  RKQ56_RS01580 (RKQ56_01585) pilE 341915..342340 (+) 426 WP_032030057.1 type IV pilin protein Machinery gene
  RKQ56_RS01585 (RKQ56_01590) rpsP 342487..342738 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RKQ56_RS01590 (RKQ56_01595) rimM 342758..343306 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RKQ56_RS01595 (RKQ56_01600) trmD 343352..344092 (+) 741 WP_032030058.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RKQ56_RS01600 (RKQ56_01605) rplS 344300..344668 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RKQ56_RS01605 (RKQ56_01610) - 344721..345662 (-) 942 WP_104131029.1 triacylglycerol lipase -
  RKQ56_RS01610 (RKQ56_01615) - 345777..346808 (-) 1032 WP_032030060.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15196.36 Da        Isoelectric Point: 7.8144

>NTDB_id=881826 RKQ56_RS01580 WP_032030057.1 341915..342340(+) (pilE) [Acinetobacter baumannii strain XH1032]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSDMMNIAQTLESQKMVNNRYPSNATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=881826 RKQ56_RS01580 WP_032030057.1 341915..342340(+) (pilE) [Acinetobacter baumannii strain XH1032]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTTGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGACATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATGGTGAATAACCGTTATCCCTCAAATGCAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

97.163

100

0.972
  comF Acinetobacter baylyi ADP1

50.714

99.291

0.504