Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AABD46_RS09675 Genome accession   NZ_CP150947
Coordinates   2101792..2103081 (-) Length   429 a.a.
NCBI ID   WP_043043278.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-HL-202212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2096792..2108081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD46_RS09645 (AABD46_09645) bioA 2096851..2098131 (+) 1281 WP_025540612.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  AABD46_RS09650 (AABD46_09650) - 2098201..2098467 (-) 267 WP_015296513.1 DksA/TraR family C4-type zinc finger protein -
  AABD46_RS09655 (AABD46_09655) - 2098608..2099321 (-) 714 WP_021449298.1 hypothetical protein -
  AABD46_RS09660 (AABD46_09660) - 2099321..2099776 (-) 456 WP_236578021.1 hypothetical protein -
  AABD46_RS09665 (AABD46_09665) - 2099843..2100307 (-) 465 WP_236578022.1 hypothetical protein -
  AABD46_RS09670 (AABD46_09670) serS 2100393..2101700 (-) 1308 WP_005495761.1 serine--tRNA ligase -
  AABD46_RS09675 (AABD46_09675) rarA 2101792..2103081 (-) 1290 WP_043043278.1 replication-associated recombination protein A Machinery gene
  AABD46_RS09680 (AABD46_09680) lolA 2103148..2103774 (-) 627 WP_005460060.1 outer membrane lipoprotein chaperone LolA -
  AABD46_RS09685 (AABD46_09685) - 2103849..2106935 (-) 3087 WP_025627420.1 DNA translocase FtsK 4TM domain-containing protein -
  AABD46_RS09690 (AABD46_09690) lrp 2107088..2107582 (-) 495 WP_005378234.1 leucine-responsive transcriptional regulator Lrp -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 47621.81 Da        Isoelectric Point: 5.8544

>NTDB_id=881698 AABD46_RS09675 WP_043043278.1 2101792..2103081(-) (rarA) [Vibrio parahaemolyticus strain vp-HL-202212]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGNTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEENDQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=881698 AABD46_RS09675 WP_043043278.1 2101792..2103081(-) (rarA) [Vibrio parahaemolyticus strain vp-HL-202212]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCCGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTAACGTTTATTGGCGCAACGACAGAGAACCCGTCTTTCGAACTGAACAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGGCTGGGCAATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
TGATGCTCGCATGTCTCTTAACTACCTTGAGCTTCTCTACGATATGGCAGAAGAGAATGATCAAGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGCCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGTGTTGGTCCAGCAGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(169-248)

MgsA AAA+ ATPase C terminal (MgsA_C)

(249-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(34-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.474

97.436

0.385