Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RKQ64_RS03000 Genome accession   NZ_CP134564
Coordinates   533327..533968 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain XH1040     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 528327..538968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ64_RS02980 (RKQ64_02980) - 528374..528706 (+) 333 WP_000169594.1 hypothetical protein -
  RKQ64_RS02985 (RKQ64_02985) - 528709..529533 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  RKQ64_RS02990 (RKQ64_02990) ponA 529551..532106 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  RKQ64_RS02995 (RKQ64_02995) pilM 532269..533327 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RKQ64_RS03000 (RKQ64_03000) pilN 533327..533968 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  RKQ64_RS03005 (RKQ64_03005) pilO 533965..534705 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  RKQ64_RS03010 (RKQ64_03010) pilP 534716..535243 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RKQ64_RS03015 (RKQ64_03015) pilQ 535311..537476 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RKQ64_RS03020 (RKQ64_03020) aroK 537488..538057 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=881456 RKQ64_RS03000 WP_000201227.1 533327..533968(+) (pilN) [Acinetobacter baumannii strain XH1040]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=881456 RKQ64_RS03000 WP_000201227.1 533327..533968(+) (pilN) [Acinetobacter baumannii strain XH1040]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709