NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	RKQ68_RS09980	Genome accession	NZ_CP134555
Coordinates	2052357..2053058 (-)	Length	233 a.a.
NCBI ID	WP_000594584.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain XH1044
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2047357..2058058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ68_RS09950 (RKQ68_09970)	-	2047664..2048107 (-)	444	WP_001246675.1	SRPBCC family protein	-
RKQ68_RS09955 (RKQ68_09975)	tadA	2048177..2048680 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
RKQ68_RS09960 (RKQ68_09980)	-	2048687..2049811 (-)	1125	WP_000982062.1	enoyl-CoA hydratase/isomerase family protein	-
RKQ68_RS09965 (RKQ68_09985)	ung	2049808..2050521 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
RKQ68_RS09970 (RKQ68_09990)	-	2050572..2051168 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
RKQ68_RS09975 (RKQ68_09995)	gspK	2051398..2052357 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
RKQ68_RS09980 (RKQ68_10000)	xcpW	2052357..2053058 (-)	702	WP_000594584.1	type II secretion system minor pseudopilin GspJ	Machinery gene
RKQ68_RS09985 (RKQ68_10005)	xcpV	2053058..2053438 (-)	381	WP_000836915.1	type II secretion system minor pseudopilin GspI	Machinery gene
RKQ68_RS09990 (RKQ68_10010)	-	2053428..2053982 (-)	555	WP_000841373.1	type II secretion system protein	-
RKQ68_RS09995 (RKQ68_10015)	-	2053992..2054600 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
RKQ68_RS10000 (RKQ68_10020)	-	2054638..2055411 (-)	774	WP_000497298.1	TatD family hydrolase	-
RKQ68_RS10005 (RKQ68_10025)	-	2055429..2055770 (-)	342	WP_001183025.1	PilZ domain-containing protein	-
RKQ68_RS10010 (RKQ68_10030)	-	2055782..2056762 (-)	981	WP_001075412.1	DNA polymerase III subunit delta'	-
RKQ68_RS10015 (RKQ68_10035)	kdsB	2056774..2057535 (-)	762	WP_000680696.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26622.59 Da Isoelectric Point: 9.5501

                                >NTDB_id=881283 RKQ68_RS09980 WP_000594584.1 2052357..2053058(-) (xcpW) [Acinetobacter baumannii strain XH1044]

MIKNKYIHIRSIASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLNQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=881283 RKQ68_RS09980 WP_000594584.1 2052357..2053058(-) (xcpW) [Acinetobacter baumannii strain XH1044]

ATGATAAAAAATAAATATATTCATATCCGAAGCATTGCTTCTCGTCTTGCGGCGCGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGACCAAAAAAAGTTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAATCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996

Detailed information NTG0881283