Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RKQ69_RS01425 Genome accession   NZ_CP134553
Coordinates   307359..308000 (+) Length   213 a.a.
NCBI ID   WP_005130723.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1045     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302359..313000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ69_RS01405 (RKQ69_01410) - 302407..302739 (+) 333 WP_000169602.1 hypothetical protein -
  RKQ69_RS01410 (RKQ69_01415) - 302742..303566 (+) 825 WP_005130721.1 putative RNA methyltransferase -
  RKQ69_RS01415 (RKQ69_01420) ponA 303584..306139 (-) 2556 WP_005130722.1 penicillin-binding protein PBP1a -
  RKQ69_RS01420 (RKQ69_01425) pilM 306301..307359 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RKQ69_RS01425 (RKQ69_01430) pilN 307359..308000 (+) 642 WP_005130723.1 PilN domain-containing protein Machinery gene
  RKQ69_RS01430 (RKQ69_01435) pilO 307997..308737 (+) 741 WP_005130724.1 type 4a pilus biogenesis protein PilO Machinery gene
  RKQ69_RS01435 (RKQ69_01440) pilP 308748..309275 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RKQ69_RS01440 (RKQ69_01445) pilQ 309338..311503 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RKQ69_RS01445 (RKQ69_01450) aroK 311515..312084 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23975.26 Da        Isoelectric Point: 5.1246

>NTDB_id=881217 RKQ69_RS01425 WP_005130723.1 307359..308000(+) (pilN) [Acinetobacter baumannii strain XH1045]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSANPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=881217 RKQ69_RS01425 WP_005130723.1 307359..308000(+) (pilN) [Acinetobacter baumannii strain XH1045]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAATCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709