Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   B0E36_RS22655 Genome accession   NZ_CP150879
Coordinates   5238257..5239990 (-) Length   577 a.a.
NCBI ID   WP_006137556.1    Uniprot ID   -
Organism   Streptomyces sp. MH191     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5233257..5244990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0E36_RS22645 - 5235001..5236254 (+) 1254 WP_234527651.1 RNA polymerase sigma factor -
  B0E36_RS22650 rcrQ 5236326..5238257 (-) 1932 WP_040893493.1 ABC transporter ATP-binding protein Regulator
  B0E36_RS22655 rcrP 5238257..5239990 (-) 1734 WP_006137556.1 ABC transporter ATP-binding protein Regulator
  B0E36_RS22660 - 5240196..5241650 (-) 1455 WP_234527653.1 FGGY family carbohydrate kinase -
  B0E36_RS22665 - 5241834..5242139 (-) 306 WP_006137558.1 YtxH domain-containing protein -
  B0E36_RS22685 fxsA 5243197..5243364 (+) 168 WP_234527654.1 FxSxx-COOH cyclophane-containing RiPP peptide -
  B0E36_RS22690 fsxC 5243541..5244836 (+) 1296 WP_234527655.1 FxsC protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62581.86 Da        Isoelectric Point: 6.1968

>NTDB_id=880982 B0E36_RS22655 WP_006137556.1 5238257..5239990(-) (rcrP) [Streptomyces sp. MH191]
MLIRLLRAHLRPYRKPLALLVLLQLLQTSATLYLPTLNADIIDNGVVKGDTGYILSFGALMIGISLVQVVCNVGAVYLGA
RTASALGRDVRAAIFDRVQSYSARELGQFGAPSLITRTTNDVQQVQMLTLMTFTLVASAPIMCVGGIVLALGLDVPLSGV
LVAVVPLLAICVTFLVRRLRPLFRSMQVRLDTVNRVLREQISGNRVIRAFVRDEYEKDRFAGANRELTEVALGTGRILAL
MFPMVMTVVNLSSIAVLWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMMPRAEVCAERIQEVLDTSSSVVP
PTAPVLELRRHGHLELRGAGFRYPGAEEPVLRHIDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVNGVDVR
ELAPELIARTVGMVPQKPYLFAGTVATNLRYGNPEASDEELWHALEVAQAKEFVSALEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVATIREADRILVLDEGRVVGSGRHGELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=880982 B0E36_RS22655 WP_006137556.1 5238257..5239990(-) (rcrP) [Streptomyces sp. MH191]
GTGCTCATACGACTCCTCCGGGCCCATCTCAGGCCCTACCGGAAACCCCTCGCGCTGCTGGTCCTGCTGCAACTGCTGCA
GACCTCCGCGACCCTCTACCTGCCCACCCTGAACGCGGACATCATCGACAACGGTGTCGTCAAGGGAGACACCGGCTACA
TCCTGTCCTTCGGCGCGCTCATGATCGGCATCTCGCTGGTCCAGGTCGTCTGCAACGTGGGGGCCGTGTACCTCGGCGCC
CGGACGGCCTCCGCGCTCGGCCGGGACGTGCGTGCCGCGATCTTCGACCGGGTGCAGTCGTACTCCGCCCGTGAGCTCGG
GCAGTTCGGGGCGCCCTCCCTGATCACCCGCACCACCAACGACGTCCAGCAGGTGCAGATGCTGACGCTGATGACGTTCA
CGCTGGTGGCCTCGGCGCCGATCATGTGTGTGGGCGGCATCGTGCTGGCGCTCGGGCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCGGTGGTCCCGCTGCTCGCCATCTGCGTCACGTTCCTGGTACGGCGGCTGCGGCCGCTGTTCCGCAGCATGCA
GGTCCGGCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCAGCGGCAACCGCGTGATCCGTGCCTTCGTCCGCGACG
AGTACGAGAAGGACCGGTTCGCCGGGGCCAACCGCGAGCTGACCGAGGTCGCGCTGGGCACCGGGCGGATCCTGGCGCTG
ATGTTCCCCATGGTGATGACCGTGGTGAACCTGTCCTCGATCGCCGTGCTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGACCTGACCGCGTTCCTGGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGATGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCTCCAGCAGCGTGGTGCCG
CCCACGGCCCCGGTCCTCGAACTGCGCCGGCACGGCCATCTCGAGCTGCGCGGGGCGGGCTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGTCACATCGACCTGGTGGCCCGGCCGGGCGAGACCACCGCCGTCATCGGTTCCACCGGCAGCGGCA
AGTCGACGCTGCTCGGGCTGGTCCCCCGGCTGTTCGACGCCACCGACGGCGAGGTGCTGGTCAACGGCGTCGACGTGCGG
GAGCTCGCGCCGGAGCTGATCGCCAGGACCGTCGGGATGGTGCCGCAGAAGCCGTACCTGTTCGCGGGAACGGTCGCCAC
CAACCTGCGCTACGGCAACCCGGAGGCGAGCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGAGCGCGTTGGAGGGCGGCCTCGACGCTCCGATCGCGCAGGGCGGCACCAATGTGTCGGGCGGTCAGCGCCAGCGTCTG
GCGATCGCCCGGACGCTCGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCCTTCTCGGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGGGCGGCGCTCGCCCGCGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GCGAGGCGGACCGGATCCTGGTCCTGGACGAGGGCCGGGTCGTCGGCTCCGGACGCCACGGGGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.966

100

0.404