Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   WMY90_RS07450 Genome accession   NZ_CP150875
Coordinates   1440350..1441618 (+) Length   422 a.a.
NCBI ID   WP_022097049.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TCI125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1435350..1446618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS07425 (WMY90_07425) - 1436907..1438553 (-) 1647 WP_022097050.1 glycosyl transferase -
  WMY90_RS07430 (WMY90_07430) - 1438766..1439071 (-) 306 WP_002952188.1 DUF1292 domain-containing protein -
  WMY90_RS07435 (WMY90_07435) ruvX 1439180..1439599 (-) 420 WP_002952187.1 Holliday junction resolvase RuvX -
  WMY90_RS07440 (WMY90_07440) - 1439599..1439865 (-) 267 WP_341276269.1 IreB family regulatory phosphoprotein -
  WMY90_RS07445 (WMY90_07445) rpmB 1439992..1440180 (-) 189 WP_002952184.1 50S ribosomal protein L28 -
  WMY90_RS07450 (WMY90_07450) rarA 1440350..1441618 (+) 1269 WP_022097049.1 replication-associated recombination protein A Machinery gene
  WMY90_RS07465 (WMY90_07465) - 1442061..1443200 (-) 1140 WP_002885655.1 site-specific integrase -
  WMY90_RS07470 (WMY90_07470) - 1443202..1443390 (-) 189 WP_000369785.1 DUF3173 domain-containing protein -
  WMY90_RS07475 (WMY90_07475) - 1443402..1444379 (-) 978 WP_011226670.1 replication initiation protein -
  WMY90_RS07480 (WMY90_07480) - 1444409..1444624 (-) 216 WP_041827116.1 hypothetical protein -
  WMY90_RS07485 (WMY90_07485) - 1444757..1446298 (-) 1542 WP_002948651.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46477.95 Da        Isoelectric Point: 6.7339

>NTDB_id=880895 WMY90_RS07450 WP_022097049.1 1440350..1441618(+) (rarA) [Streptococcus thermophilus strain TCI125]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=880895 WMY90_RS07450 WP_022097049.1 1440350..1441618(+) (rarA) [Streptococcus thermophilus strain TCI125]
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTTTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TGACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACTTTAGACATAGTTGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAATCAGG
GAATTTACCGATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCGGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.905

99.289

0.595