Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   RLO20_RS08935 Genome accession   NZ_CP134538
Coordinates   1865796..1866719 (-) Length   307 a.a.
NCBI ID   WP_012680088.1    Uniprot ID   C0M8B8
Organism   Streptococcus equi subsp. equi strain XJ5012     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1860796..1871719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLO20_RS08935 (RLO20_08935) amiF 1865796..1866719 (-) 924 WP_012680088.1 ATP-binding cassette domain-containing protein Regulator
  RLO20_RS08940 (RLO20_08940) amiE 1866712..1867782 (-) 1071 WP_012680089.1 ABC transporter ATP-binding protein Regulator
  RLO20_RS08945 (RLO20_08945) amiD 1867791..1868717 (-) 927 WP_012680090.1 oligopeptide ABC transporter permease OppC Regulator
  RLO20_RS08950 (RLO20_08950) amiC 1868717..1870216 (-) 1500 WP_012680091.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34714.94 Da        Isoelectric Point: 6.9308

>NTDB_id=880874 RLO20_RS08935 WP_012680088.1 1865796..1866719(-) (amiF) [Streptococcus equi subsp. equi strain XJ5012]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSSGEIRYDGKIINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEDERKEKIKQMMSEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKKIQSEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFV
NPVHPYTKSLLSAVPIPDPILERQKKLVVYHPEQHDYSVDKPSMVEIKPNHFVWANQVEAERYRKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=880874 RLO20_RS08935 WP_012680088.1 1865796..1866719(-) (amiF) [Streptococcus equi subsp. equi strain XJ5012]
ATGTCTGAAAAATTAGTTGAAGTAAAAGACCTGGAGATTTCCTTTGGAGAGGGAAAGAAAAAGTTTGTTGCCGTTAAAAA
TGCCAATTTCTTTATCAATAAAGGAGAAACCTTTTCTCTTGTTGGAGAATCAGGCAGTGGAAAGACAACAATCGGTCGTG
CCATCATTGGTTTAAATGAGACAAGTTCAGGCGAAATCCGCTATGATGGTAAGATTATTAATGGTAAAAAATCAAAATCT
GAAGCTAATGAACTGATTAGAAAAATCCAAATGATTTTTCAGGATCCAGCAGCCAGCCTGAATGAGCGTGCAACGGTTGA
TTATATCATCTCAGAAGGCCTTTATAATTTTAACCTATTCAAGACAGAAGATGAACGTAAAGAAAAAATTAAACAGATGA
TGTCAGAGGTGGGCTTGCTTGCAGAGCACCTGACACGCTACCCTCATGAGTTTTCAGGTGGGCAGCGTCAGCGTATAGGC
ATTGCAAGAGCGCTTGTAATGGATCCGGAGTTTGTTATTGCTGATGAGCCGATTTCAGCTCTTGATGTATCTGTTCGTGC
CCAAGTCTTGAATCTGTTGAAGAAAATACAGTCTGAAAAAGGCTTGACCTATTTATTCATTGCTCATGATTTATCGGTTG
TGCGTTTTATTTCAGATCGTATTGCTGTTATTCACAAAGGAGTAATTGTTGAAGTCGCCGAAACAGAAGAGCTTTTTGTT
AACCCTGTTCACCCTTATACCAAATCTCTGCTGTCAGCAGTACCAATTCCAGATCCCATTTTAGAGCGTCAAAAGAAATT
GGTGGTTTATCATCCAGAGCAGCATGACTATTCTGTTGACAAGCCATCAATGGTGGAAATCAAACCAAATCACTTCGTCT
GGGCTAACCAGGTGGAAGCGGAGCGTTACCGCAAAGAGCTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0M8B8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

83.007

99.674

0.827
  amiF Streptococcus thermophilus LMD-9

82.68

99.674

0.824
  amiF Streptococcus salivarius strain HSISS4

82.353

99.674

0.821