Detailed information NTG0880838

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: RLO20_RS01540
• Genome accession: NZ_CP134538
• Coordinates: 297002..297937 (+)
• Length: 311 a.a.
• NCBI ID: WP_012678999.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi strain XJ5012
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 292002..302937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RLO20_RS01520 (RLO20_01520)	-	292162..293820 (+)	1659	WP_012678995.1	peptide ABC transporter substrate-binding protein	-
RLO20_RS01525 (RLO20_01525)	-	293989..294903 (+)	915	WP_012678996.1	ABC transporter permease	-
RLO20_RS01530 (RLO20_01530)	-	294913..295944 (+)	1032	WP_012678997.1	ABC transporter permease	-
RLO20_RS01535 (RLO20_01535)	oppD	295956..297002 (+)	1047	WP_012678998.1	ABC transporter ATP-binding protein	Regulator
RLO20_RS01540 (RLO20_01540)	amiF	297002..297937 (+)	936	WP_012678999.1	ABC transporter ATP-binding protein	Regulator
RLO20_RS01545 (RLO20_01545)	rnjA	298566..300248 (-)	1683	WP_012514941.1	ribonuclease J1	-
RLO20_RS01550 (RLO20_01550)	-	300250..300480 (-)	231	WP_012514942.1	DNA-dependent RNA polymerase subunit epsilon	-
RLO20_RS01555 (RLO20_01555)	tsaB	300766..301464 (+)	699	WP_317608672.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
RLO20_RS01560 (RLO20_01560)	rimI	301467..301892 (+)	426	WP_012679001.1	ribosomal protein S18-alanine N-acetyltransferase	-
RLO20_RS01565 (RLO20_01565)	tsaD	301882..302898 (+)	1017	WP_012678539.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 34973.12 Da
• Isoelectric Point: 8.1293

>NTDB_id=880838 RLO20_RS01540 WP_012678999.1 297002..297937(+) (amiF) [Streptococcus equi subsp. equi strain XJ5012]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQNHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEAEQYRAECGL

Nucleotide

• Length: 936 bp

>NTDB_id=880838 RLO20_RS01540 WP_012678999.1 297002..297937(+) (amiF) [Streptococcus equi subsp. equi strain XJ5012]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACGA
CAGTTGGTCGAGCTATTTTGAAACTGTATGACATTAGTGATGGTGAGATTATCTTTAACGGAGAAAATGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCACAAATGATCTTCCAAGATCCTCAGGCTAGTTTGAACGGCCGTAT
GAAAATTAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAAGCAAGAGTCC
AGGAGCTGTTAAAGCTTGTTGGGCTCAATCAGAACCATTTGACGCGCTACCCACATGAATTTTCCGGTGGTCAACGCCAG
CGAATTGGCATTGCGCGTGCCTTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAAAAGCGTGGCTTGACCTATCTCTTTATCGCTCACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGGACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGTATTGCAGAGGTTTATGATCCTAGCCAGGAGCTAGATGGCCAAGAGCGACAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACTCAGGCCGAAGCCGAGCAGTACCGAGCAGAGTGTGGCCTTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.754	98.071	0.537
amiF	Streptococcus thermophilus LMG 18311	54.426	98.071	0.534
amiF	Streptococcus salivarius strain HSISS4	54.098	98.071	0.531