Detailed information NTG0880764

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: WMZ02_RS05465
• Genome accession: NZ_CP150864
• Coordinates: 1219475..1220764 (+)
• Length: 429 a.a.
• NCBI ID: WP_021447448.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain NJIFDCVp7
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1214475..1225764

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WMZ02_RS05450 (WMZ02_05450)	lrp	1214974..1215468 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
WMZ02_RS05455 (WMZ02_05455)	-	1215621..1218707 (+)	3087	WP_128413050.1	DNA translocase FtsK 4TM domain-containing protein	-
WMZ02_RS05460 (WMZ02_05460)	lolA	1218782..1219408 (+)	627	WP_005460060.1	outer membrane lipoprotein chaperone LolA	-
WMZ02_RS05465 (WMZ02_05465)	rarA	1219475..1220764 (+)	1290	WP_021447448.1	replication-associated recombination protein A	Machinery gene
WMZ02_RS05470 (WMZ02_05470)	serS	1220856..1222163 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
WMZ02_RS05475 (WMZ02_05475)	-	1222533..1223099 (+)	567	WP_228086503.1	ATPase	-
WMZ02_RS05480 (WMZ02_05480)	-	1223093..1223533 (+)	441	WP_029842471.1	hypothetical protein	-
WMZ02_RS05485 (WMZ02_05485)	-	1223668..1223934 (+)	267	WP_346338266.1	DksA/TraR family C4-type zinc finger protein	-
WMZ02_RS05490 (WMZ02_05490)	bioA	1224004..1225284 (-)	1281	WP_229618004.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47564.76 Da
• Isoelectric Point: 5.8532

>NTDB_id=880764 WMZ02_RS05465 WP_021447448.1 1219475..1220764(+) (rarA) [Vibrio parahaemolyticus strain NJIFDCVp7]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=880764 WMZ02_RS05465 WP_021447448.1 1219475..1220764(+) (rarA) [Vibrio parahaemolyticus strain NJIFDCVp7]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTTCATCGCTTCAACAAATCGCAACAAGATGCTTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAATGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGTCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAGGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTACCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385