Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RKS58_RS16475 Genome accession   NZ_CP134502
Coordinates   3228560..3230992 (-) Length   810 a.a.
NCBI ID   WP_313870177.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain Lys24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3223560..3235992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKS58_RS16465 (RKS58_16465) corA 3225568..3226533 (-) 966 WP_066036480.1 magnesium/cobalt transporter CorA -
  RKS58_RS16470 (RKS58_16470) hpaB 3227003..3228436 (-) 1434 WP_313870176.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  RKS58_RS16475 (RKS58_16475) recD2 3228560..3230992 (-) 2433 WP_313870177.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RKS58_RS16480 (RKS58_16480) hisA 3231182..3231949 (+) 768 WP_048392137.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  RKS58_RS16485 (RKS58_16485) - 3231946..3232233 (+) 288 WP_048392136.1 hypothetical protein -
  RKS58_RS16490 (RKS58_16490) - 3232780..3233529 (+) 750 WP_048392669.1 GTP pyrophosphokinase family protein -
  RKS58_RS16495 (RKS58_16495) - 3233619..3235064 (-) 1446 WP_313870179.1 MDR family MFS transporter -
  RKS58_RS16500 (RKS58_16500) - 3235238..3235897 (-) 660 WP_048392133.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90830.19 Da        Isoelectric Point: 4.8054

>NTDB_id=880668 RKS58_RS16475 WP_313870177.1 3228560..3230992(-) (recD2) [Lysinibacillus capsici strain Lys24]
MTDHLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGSNALRVILEDPSALDAVPRLSAEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAILHILNTAA
LSDGHVYLDAEQVLPLVKEMLEQSQRQEIPFEDISQACIRLREEGKICGEETRLYLPSLYFSEVGIASKILSLIERNNKA
EHFSKDEIRKAIGETEEILNVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLVHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPQELTAKTSDRSFIKASADQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETIEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMEIEEELVEVEAVPVDNEGMQEPVSVEQKLTVETAPYIHPMIGMN
DVSPYDFLDD

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=880668 RKS58_RS16475 WP_313870177.1 3228560..3230992(-) (recD2) [Lysinibacillus capsici strain Lys24]
ATGACAGATCATTTAGATTTATTTGAACTCAATAAATTTTTTATACTCGGACGTCCGATCGTCTCTATCTTTCATAATGC
GCAAAATATGTATTCGATTGTACGTGTGAAAATTCAAGAGACGAATTTGCAATATGAAGATAAAGAGATTATTGTTGTTG
GTTATTTTCCCCCACTACAAATGGATGAACAATATCGATTTACTGGTATTTTAAAACAGCATCCTAAATACGGTGCTCAA
TTTCAAATTGAGACATTTACAAAAGAGGTACCTGCAACTGAGCAAGGAATTATTCATTATTTATCTAGTGACCTCTTCGT
AGGGATCGGGAAAAAAACAGCTGAAACGATTGTTGAAAAACTAGGTTCTAATGCACTCCGTGTTATTTTAGAAGATCCTA
GTGCCCTCGATGCTGTTCCGCGTCTATCCGCTGAAAAAAAAGAAGTCATTCACCGCACTATTGAGCAAAACTTAGGCTTA
GAGCGGGTCATGATTCAATTGAATGAGTGGGGATTTGGTCCACAGCTTGGGATGAAGATTTATCAAACCTATCGAACAGA
AGCCATTGAATTACTGACAGAAAATCCATACCGCTTGATTGAAGATGTGGAAGGGGTGGGTTTCTTTCGAGCCGACGAGC
TAGGTGCGAAATTAGGTATAACTGGTAAACATCCTGATCGTGTCAAAGCAGCGATTTTACATATTTTAAATACAGCAGCT
TTATCGGATGGACATGTCTATCTAGATGCAGAACAGGTTTTACCGCTCGTTAAGGAAATGCTTGAACAAAGCCAACGACA
GGAGATACCATTCGAGGATATTTCTCAAGCCTGCATCAGACTCCGTGAAGAAGGCAAAATTTGTGGTGAAGAGACAAGGT
TATATTTGCCATCACTCTATTTTTCAGAGGTAGGGATTGCATCGAAAATCTTATCGCTTATCGAGCGGAATAATAAGGCT
GAACATTTTAGTAAAGATGAAATTCGAAAAGCCATTGGAGAAACAGAGGAGATACTCAATGTTACCTATGCAGAAACACA
AGCGAATGCCATCGAACAGGCTTTAAATTCAGCTGTTATGATTTTAACGGGTGGTCCTGGTACGGGGAAAACCACTGTTG
TACGGGGAGTCGTAGAAGTTTATGCAAAGCTTCATGGGCTATCCTTAAATCCAAAAGAGTATGCTCAAAAAGAGGAGCCT
TTTCCGATTATTCTTTGTGCGCCGACTGGACGTGCTGCTAAACGATTAGCCGAATCAACAGAGCTTCCTGCGATGACCAT
CCATCGACTGCTCGGTTTTACAGGGCAAGAAAAAGAGGAAGAAACAGAGCGGGAAGTAACAGGTAAGCTGATTATCGTGG
ATGAAATGTCAATGGTTGATACATGGCTTGTCCATCAATTATTAAAAGCTTTACATGAAGATGTTCAAGTTGTCTTTGTT
GGAGATCAGGATCAGCTTCCACCAGTAGGTCCAGGACAGGTGTTAAAGGATTTATTAGCATCCAAGCAGCTACCAACTGT
CGAGCTAACAGATGTTTATCGACAAGCAGAAGGCTCAACGATTATTGAACTTGCGCATCAAATAAAAAAAGGAACGATTC
CACAAGAGTTAACAGCTAAAACCTCTGATCGTTCGTTTATTAAGGCTTCAGCAGACCAAGTTGCCAACGTTGTAACTCAA
GTTGTCAAAAGTGCTGTCGCAAAGGGCCAGGAAATCCGTAATATTCAAGTTTTGGCGCCCATGTATAAAGGACCAGCTGG
TATAGATAATTTAAATAAAATGATTCAAGAGCTTATTAACCCAAATGATACTGGCACACGAAAAGAGCTAGTCTTTGGGG
ATGTCACCTATCGAATAAAGGATAAAGTTCTTCAGCTTGTCAATCAACCTGAAAGCAATGTCTTTAATGGAGATATGGGT
GAGGTCATTAGTATTATTAAGGCGAAAGAGACGATCGAAAAACAAGATTTACTGATTGTATCCTTTGATGGCATTGAAGT
GACCTATCAACGAAGCGACCTCAATCAATTGACACTAGCTTATTGTTGCTCCATCCATAAATCACAGGGCTCTGAGTTTC
AAACGGTCATTATGCCAGTGGTTAGAGGGTATTCCAAAATGTTACGGCGTAATCTTTTATACACAGGTATTACACGTGCT
AAAAACTTTTTGATTTTATGTGGTGAACCAGATGTGCTTGCGGATGGTTTACAACGTACAGATGACCTTCAGCGTTTCAC
CTCTTTACGTGCAAGACTTAACCCAATGGAAATTGAGGAAGAACTTGTGGAAGTCGAGGCAGTGCCAGTAGATAATGAAG
GGATGCAGGAGCCTGTTTCCGTTGAACAAAAGCTAACAGTAGAAACAGCCCCTTATATTCATCCAATGATTGGTATGAAT
GATGTCTCTCCATATGATTTTTTGGATGACTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

AAA domain (AAA_30)

(343-550)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-660)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.206

100

0.526