Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RI196_RS13245 Genome accession   NZ_CP134501
Coordinates   2715898..2718276 (-) Length   792 a.a.
NCBI ID   WP_117016752.1    Uniprot ID   -
Organism   Aeribacillus composti strain HB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2710898..2723276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI196_RS13230 (RI196_13230) dtd 2712501..2712941 (-) 441 WP_063387981.1 D-aminoacyl-tRNA deacylase -
  RI196_RS13235 (RI196_13235) - 2712957..2715140 (-) 2184 WP_063387980.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RI196_RS13240 (RI196_13240) - 2715365..2715877 (-) 513 WP_063387979.1 adenine phosphoribosyltransferase -
  RI196_RS13245 (RI196_13245) recJ 2715898..2718276 (-) 2379 WP_117016752.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RI196_RS13250 (RI196_13250) - 2718802..2720022 (+) 1221 WP_063388609.1 IS110 family transposase -
  RI196_RS13255 (RI196_13255) secDF 2720431..2722653 (-) 2223 WP_066249528.1 protein translocase subunit SecDF -
  RI196_RS13260 (RI196_13260) - 2722699..2722992 (-) 294 WP_066249531.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 89989.46 Da        Isoelectric Point: 5.5925

>NTDB_id=880630 RI196_RS13245 WP_117016752.1 2715898..2718276(-) (recJ) [Aeribacillus composti strain HB-1]
MLRSKFRWNRLYRDESNEEAVRALIDSLNITYLTARLLVNRGIQNVEEAKEFLHIKEPSFHDPFLLDGMERACERIFAAI
RAGEKIVVYGDYDADGVSSTAVLLTALKELGANVDFYIPNRFSEGYGPNEHAFRMIHEKGCRLIITVDTGIAAINEADLA
KRLGIDLIITDHHEPGPVLPDAYAIIHPKLPNSTYPFKELAGVGVAFKMAHALYGKVPESLIEIAAIGTIADLVPLYGEN
RLLAKKGIEKLKTTTRPGINSLLSIAGVDKSSVNEETIGFVLGPRINAAGRLQEADPAVELLLTDDKEKADMLAKEIDQL
NKQRQKLVQEITDEAIKEIEKNFPIEDNPVLVVAKENWNSGVIGIVASRLVEKFYRPAIVLSIDRETGLAKGSARSIQGF
DLFKNLSECRELLPHFGGHTMAAGMTLKAEHIDELRQKMIDLANSQLSDEDFIPVKNIECACSLEHVTIKAVEELEKLAP
FGVDNPKPLFLLENVNAADVRKIGVNGNHLKMKIEEKEFELDVVGFGQGELAEEISPFANVSIVGELAINEWNYVKKPQL
LLQDLAVPAWQLFDWRGSRGTEALLSKLPAEKRLLIAFHEESIKLYKDQPYIHEIHIISEIKDYKNIDVSNKYVVFLDMP
PAIEFLVSAFEQGMPERIYAIFYQHADHFFQTMPTREHFKWYYAFLTKKSSFDYKKYGEDLAKYRGWTKETIFFMTKVFF
ELEFVTINNGVITLNKKVKKRDLSESGTYQQKLDQMKLEQQLLYSSYQELKEWFEKAVLKRDADKFLQVHEW

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=880630 RI196_RS13245 WP_117016752.1 2715898..2718276(-) (recJ) [Aeribacillus composti strain HB-1]
ATGCTGAGATCTAAATTTCGTTGGAATCGTTTATATAGGGATGAGTCCAACGAAGAGGCTGTTCGAGCATTAATCGACTC
TTTGAATATTACATATTTGACTGCTCGATTACTTGTGAATCGCGGCATTCAAAATGTTGAAGAAGCAAAAGAGTTTTTAC
ATATAAAGGAACCTTCATTTCATGATCCTTTTTTGTTGGATGGGATGGAGCGGGCATGTGAGCGTATTTTTGCAGCAATC
CGCGCTGGTGAAAAGATTGTCGTATACGGTGATTATGATGCGGACGGCGTTTCCAGCACTGCCGTCCTGTTGACGGCATT
AAAGGAATTGGGGGCAAACGTCGATTTTTACATACCGAATCGATTTTCAGAAGGATACGGGCCAAACGAACATGCTTTCC
GAATGATTCATGAAAAAGGATGCAGGCTGATTATAACAGTTGATACCGGCATCGCGGCAATCAATGAAGCGGATTTAGCC
AAAAGGCTTGGAATCGACCTCATTATAACAGACCATCATGAACCGGGGCCTGTTTTGCCTGATGCGTATGCGATCATTCA
TCCGAAATTGCCAAATTCAACATATCCTTTTAAGGAGCTGGCAGGTGTAGGCGTTGCTTTTAAAATGGCCCATGCCCTTT
ATGGAAAGGTTCCAGAATCTCTGATAGAGATCGCAGCCATTGGAACAATTGCTGATTTAGTACCTCTATACGGAGAAAAT
CGGCTTCTTGCGAAAAAAGGGATTGAAAAATTAAAAACGACGACAAGACCTGGCATAAATTCGCTTCTTTCCATTGCTGG
AGTGGACAAATCTTCCGTAAATGAGGAAACGATAGGATTTGTTTTAGGACCGAGAATCAATGCGGCAGGGAGGCTGCAAG
AAGCCGATCCTGCCGTTGAATTGTTGTTGACAGATGATAAAGAAAAAGCTGATATGCTTGCTAAGGAAATCGATCAATTA
AATAAGCAAAGGCAGAAGCTTGTACAAGAGATAACGGACGAAGCGATTAAGGAAATTGAGAAAAATTTTCCAATCGAAGA
CAATCCTGTTTTAGTCGTCGCAAAAGAAAACTGGAATTCTGGAGTGATCGGAATCGTTGCTTCCAGATTGGTCGAAAAAT
TTTACCGTCCTGCCATCGTGTTGAGCATTGATCGTGAGACAGGTCTTGCCAAAGGGTCTGCGCGAAGCATTCAAGGGTTT
GATCTATTTAAAAACTTATCGGAATGCAGGGAGCTTCTCCCTCATTTTGGAGGCCATACGATGGCTGCTGGCATGACGCT
GAAAGCAGAGCATATTGACGAGCTGCGCCAAAAAATGATCGATCTTGCAAATAGTCAGCTTTCAGATGAAGATTTTATTC
CTGTAAAAAACATTGAATGTGCCTGTTCATTGGAGCATGTCACAATAAAAGCAGTCGAAGAGCTGGAGAAGCTTGCCCCT
TTCGGAGTCGATAATCCGAAGCCGCTCTTTTTACTAGAGAATGTCAATGCGGCAGATGTTAGAAAAATTGGGGTAAACGG
AAATCATTTGAAAATGAAGATTGAGGAGAAGGAATTTGAATTAGATGTCGTCGGCTTTGGACAGGGAGAATTGGCAGAAG
AAATATCTCCTTTCGCAAACGTTTCTATTGTCGGTGAGCTTGCGATCAACGAATGGAATTATGTAAAAAAGCCGCAGCTA
TTGCTTCAAGACCTTGCCGTGCCAGCGTGGCAGCTTTTTGATTGGCGAGGTTCAAGAGGAACGGAGGCTTTGCTCTCTAA
ACTTCCTGCTGAAAAACGATTGCTGATCGCCTTTCATGAAGAATCTATAAAATTATATAAAGATCAACCGTACATTCATG
AAATTCATATAATATCAGAAATAAAGGATTACAAAAATATAGATGTTTCCAATAAGTATGTTGTATTTCTCGATATGCCC
CCGGCAATCGAATTTCTTGTTTCAGCATTTGAGCAAGGAATGCCTGAAAGAATTTATGCTATTTTTTATCAGCATGCAGA
CCACTTTTTTCAAACAATGCCGACAAGAGAGCATTTTAAATGGTATTACGCATTCTTAACGAAAAAAAGTTCTTTCGATT
ACAAAAAATATGGGGAAGATTTAGCCAAATACCGTGGCTGGACAAAAGAAACGATCTTTTTTATGACAAAGGTGTTTTTT
GAACTTGAATTTGTTACAATAAACAATGGTGTGATTACATTAAACAAAAAGGTGAAAAAACGGGATTTATCAGAATCCGG
GACATATCAGCAGAAGCTGGATCAAATGAAACTGGAACAGCAGCTTCTCTATTCTTCTTATCAAGAACTGAAGGAATGGT
TTGAAAAGGCAGTCTTGAAACGAGATGCCGATAAATTTTTACAAGTTCATGAATGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(318-441)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(571-774)

DHH family (DHH)

(85-229)

RecJ OB domain (RecJ_OB)

(458-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.598

99.242

0.552