Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RI196_RS13170 Genome accession   NZ_CP134501
Coordinates   2698618..2700993 (-) Length   791 a.a.
NCBI ID   WP_063387990.1    Uniprot ID   A0A165XNM0
Organism   Aeribacillus composti strain HB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2693618..2705993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI196_RS13150 (RI196_13150) - 2693797..2694063 (-) 267 WP_063387994.1 IreB family regulatory phosphoprotein -
  RI196_RS13155 (RI196_13155) alaS 2694135..2696771 (-) 2637 WP_311066348.1 alanine--tRNA ligase -
  RI196_RS13160 (RI196_13160) - 2697100..2698161 (-) 1062 WP_063387992.1 AI-2E family transporter -
  RI196_RS13165 (RI196_13165) - 2698234..2698419 (-) 186 WP_063387991.1 hypothetical protein -
  RI196_RS13170 (RI196_13170) recD2 2698618..2700993 (-) 2376 WP_063387990.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RI196_RS13175 (RI196_13175) - 2701015..2701668 (-) 654 WP_063388167.1 tetratricopeptide repeat protein -
  RI196_RS13180 (RI196_13180) mnmA 2701750..2702865 (-) 1116 WP_063387989.1 tRNA 2-thiouridine(34) synthase MnmA -
  RI196_RS13185 (RI196_13185) - 2702881..2704026 (-) 1146 WP_130158149.1 cysteine desulfurase family protein -
  RI196_RS13190 (RI196_13190) cymR 2704045..2704464 (-) 420 WP_063387987.1 cysteine metabolism transcriptional regulator CymR -
  RI196_RS13195 (RI196_13195) - 2704600..2705877 (+) 1278 WP_311066349.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89459.73 Da        Isoelectric Point: 5.1240

>NTDB_id=880629 RI196_RS13170 WP_063387990.1 2698618..2700993(-) (recD2) [Aeribacillus composti strain HB-1]
MGGQQESLFHEESTPFVRGVIKHIVFQNEQNFYTVIKVKIEETNEQFEQDQVTVTGFFPLLQLHDSYTFFGAKKYHPKFG
VQFQAERFQKELPTTKEGVIQYLSSGLFKGIGKKTAEAIVNELGEHAISIILEDPDSLKRVKKLSKEKAKILAETLKEHQ
GLEGVLIGLNQLGIGPALGMKIYQLYREDTLKIIQKNPYQLVEDIEGIGFIRADEIGRELGISGNHPDRLKAACLFTIEQ
DAVKEGHVYVTKVQLMEKAKKLLTQNGEDISDQDIERIILELEEDRKIIVEEDRIYLPSLYYAEVGLANNIEEILTQNQF
QDMFPESEFLLELGKLEEKMNVQYAPSQKEAIQRAIHSPILLLTGGPGTGKTTVIKGIVEIYANLHGLSLNPKEYQKKEE
PFPIVLVAPTGRAAKRMAEATGLPAVTIHRLLGWNGSEGFEHNEDHPISGKLLIVDEVSMVDIWLMHQLFKSLPSDIQIV
LVGDEHQLPSVGPGQVLRDLIQSGRIPVVTLTDIYRQAEGSTIIDLAHSIRQGTLPANLLQTTQDRSFIPCTTSQIKEVI
TRVIENALKKGYSAKDIQVLAPMYRGIAGIDQLNEMLQEMLNPPSKEKREIKHGNVIYRIGDKVLQLVNQPDQNVFNGDI
GEIVSIFYAKENVEKEDMVVISYDGIEVTYTKQDFNQFTHAYCCSIHKAQGSEFPIVILPVVKGYFRMLRRNLIYTAVTR
SKQFLIMCGEWEALKMGVYNNQESMRQTTLKERLKTSELVELKEELPFPLEDANIGMENITPYDFMEEGEG

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=880629 RI196_RS13170 WP_063387990.1 2698618..2700993(-) (recD2) [Aeribacillus composti strain HB-1]
ATGGGCGGTCAACAGGAGAGTTTGTTTCATGAGGAAAGTACTCCTTTTGTTCGCGGAGTCATTAAACATATTGTGTTCCA
GAATGAGCAAAATTTTTATACTGTTATTAAAGTGAAAATTGAAGAGACGAATGAACAGTTTGAGCAAGATCAAGTGACCG
TGACGGGTTTTTTTCCTCTTCTCCAATTACATGACAGCTATACGTTTTTTGGCGCAAAAAAATACCATCCAAAATTCGGC
GTACAATTTCAAGCTGAGCGTTTTCAAAAGGAGCTTCCAACTACGAAAGAAGGAGTTATTCAATATTTATCAAGCGGGCT
TTTTAAAGGAATCGGCAAAAAAACAGCGGAAGCGATCGTGAATGAACTGGGGGAACATGCGATTTCGATTATTTTGGAGG
ATCCCGATTCATTAAAAAGAGTGAAGAAGCTTTCAAAGGAAAAAGCCAAAATACTGGCTGAAACACTGAAGGAACATCAA
GGTTTAGAAGGGGTTTTAATCGGATTAAATCAGCTTGGCATTGGGCCTGCACTTGGGATGAAAATTTATCAGCTATATCG
GGAGGATACGCTTAAAATCATTCAAAAAAACCCATATCAATTGGTGGAAGATATTGAAGGGATCGGCTTTATTCGAGCGG
ATGAAATTGGGAGAGAGCTTGGGATCTCCGGCAATCATCCCGACCGGCTGAAGGCGGCTTGTTTGTTCACTATTGAACAA
GATGCTGTAAAAGAAGGACATGTATATGTTACAAAAGTTCAGCTGATGGAAAAAGCGAAAAAATTGCTCACCCAAAATGG
AGAAGACATATCTGATCAGGATATTGAAAGAATCATTCTTGAATTGGAAGAAGATCGAAAAATTATCGTCGAGGAAGATC
GAATTTATTTACCCTCTCTTTACTATGCTGAAGTGGGACTTGCCAATAACATTGAAGAAATTTTAACCCAAAACCAATTT
CAAGATATGTTTCCTGAATCAGAATTTTTGCTGGAGTTAGGAAAACTGGAAGAAAAAATGAATGTTCAGTATGCCCCCTC
TCAAAAAGAAGCCATTCAGCGGGCTATTCATTCGCCGATTCTTTTGCTGACCGGCGGGCCTGGAACGGGAAAAACAACCG
TTATCAAAGGCATCGTTGAAATTTATGCGAACCTCCATGGCCTTTCATTGAACCCAAAAGAATATCAAAAGAAGGAAGAG
CCGTTTCCCATTGTACTGGTGGCACCTACCGGACGAGCTGCAAAAAGAATGGCAGAAGCAACCGGTCTTCCTGCCGTCAC
AATCCACCGCCTTTTAGGATGGAATGGTTCAGAAGGATTTGAACACAATGAGGATCATCCGATTTCTGGAAAGCTTCTGA
TTGTTGATGAAGTATCAATGGTTGATATTTGGCTCATGCATCAATTGTTTAAATCGCTTCCTTCGGACATACAAATTGTT
CTTGTCGGAGACGAACACCAGCTTCCGTCCGTTGGACCCGGCCAAGTGCTTCGCGATTTGATTCAATCCGGACGAATCCC
AGTTGTTACACTGACAGATATTTATAGACAAGCAGAAGGATCTACAATTATTGATTTGGCCCATTCAATCCGCCAAGGAA
CTCTTCCAGCGAACCTTTTGCAAACGACACAAGACAGATCGTTTATTCCTTGTACAACATCACAAATAAAAGAAGTTATA
ACGAGAGTAATTGAGAACGCTTTGAAAAAAGGATATTCTGCGAAGGATATACAGGTGTTGGCACCGATGTACAGAGGGAT
TGCCGGCATTGATCAGTTGAATGAAATGCTTCAGGAAATGTTAAACCCCCCTTCAAAAGAAAAAAGAGAGATCAAGCATG
GCAACGTTATTTACCGAATCGGGGACAAAGTGCTGCAGCTCGTCAATCAGCCTGATCAAAACGTGTTTAATGGCGATATT
GGGGAGATTGTTTCTATTTTTTACGCAAAAGAAAATGTCGAAAAAGAAGATATGGTGGTCATTTCTTACGACGGTATCGA
AGTAACCTATACGAAGCAAGATTTTAATCAGTTTACTCATGCTTACTGCTGCTCCATCCATAAAGCGCAGGGAAGCGAAT
TTCCGATTGTCATTTTGCCGGTAGTAAAAGGCTACTTTCGGATGTTGAGAAGAAATTTGATTTATACAGCTGTTACAAGG
AGCAAGCAATTTTTAATTATGTGCGGAGAATGGGAAGCGTTAAAAATGGGAGTATACAACAATCAGGAGTCGATGAGGCA
GACAACCTTAAAAGAGAGGCTGAAAACGTCTGAACTTGTCGAGCTGAAAGAGGAGCTTCCTTTTCCACTAGAAGATGCCA
ACATTGGGATGGAGAACATCACTCCATATGATTTTATGGAAGAGGGCGAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-553)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165XNM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.613

99.368

0.632