Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RH061_RS16860 Genome accession   NZ_CP134494
Coordinates   3339579..3341945 (-) Length   788 a.a.
NCBI ID   WP_311071898.1    Uniprot ID   -
Organism   Mesobacillus jeotgali strain PS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3334579..3346945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RH061_RS16845 (RH061_16845) dtd 3336004..3336444 (-) 441 WP_311071893.1 D-aminoacyl-tRNA deacylase -
  RH061_RS16850 (RH061_16850) - 3336478..3338670 (-) 2193 WP_311071895.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RH061_RS16855 (RH061_16855) - 3339076..3339588 (-) 513 WP_167832846.1 adenine phosphoribosyltransferase -
  RH061_RS16860 (RH061_16860) recJ 3339579..3341945 (-) 2367 WP_311071898.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RH061_RS16865 (RH061_16865) - 3342101..3342415 (-) 315 WP_311071901.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  RH061_RS16870 (RH061_16870) - 3342437..3343360 (-) 924 WP_311071903.1 cation diffusion facilitator family transporter -
  RH061_RS16875 (RH061_16875) secDF 3343524..3345788 (-) 2265 WP_311071905.1 protein translocase subunit SecDF -
  RH061_RS16880 (RH061_16880) - 3346407..3346703 (-) 297 WP_311071907.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88091.79 Da        Isoelectric Point: 5.0167

>NTDB_id=880444 RH061_RS16860 WP_311071898.1 3339579..3341945(-) (recJ) [Mesobacillus jeotgali strain PS1]
MLKPKSRWIVKKSDQTIIDSLAKDLNITHLTASLLVNRGLDTVEDARYFLFGAKSEFHDPFLLKDMDKAVERINEAIKTQ
EPILVFGDYDADGVSSTTVMMKALDELGANADYYIPNRFTEGYGPNEKAFRSAADSGVGLIITVDTGISALHEASVAKEV
GIDLVITDHHEPGPVLPDAFAIIHPKLEDSVYPFKDLAGVGVAFKVAHALLKRVPEHLLEYAAIGTIADLVPLMGENRLI
ATRGIEKLKSSQTPGLNALLKLAKTDRSSIDEETIGFMIGPRVNAAGRLGSADPAVQLMMTQDPEEAMMLAEEIDSINKE
RQNIVSQIAEEAVAEVEMNFPIKDNSVLVVGKEGWNAGVIGIVASKLVEKYYRPTIVLSFDNEKGLAKGSARSIAGFDLF
KNLSTCRDILPHFGGHPMAAGMTLNLSDVDELRKRLNSLAKEQLKEEDLIPVSHIDASIEVKEITIETINELGMLSPYGV
SNPKPKVMIEAANISTLRKIGADQSHLKLALEEEGNVIDGIGFGFGHLHDHISPSSKLSVIGELSINEWNNIKKPQIFLR
DVAVKSWQLFDFRGLKRLDKLPDMIPGDHIKWILFNPDLKNKFSPIIGDSLEVVTAEDQAQQIELDQSYVVLLDLPPSKE
ILENLFSGKNPGRVYVHFYKESSDFFTTMPTREHFKWFYAFLAKKGPFDLKRYGDDLAKHRGWTKETVDFMSQVFFELDF
VKINNGFISLEENVPKRDLTESKTYQHKVQAFTLENELLYSSYEQLKNWFDQFIQESVKNEEAIIQWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=880444 RH061_RS16860 WP_311071898.1 3339579..3341945(-) (recJ) [Mesobacillus jeotgali strain PS1]
ATGTTAAAGCCAAAATCAAGGTGGATTGTGAAAAAATCCGACCAGACAATAATAGATTCACTCGCCAAGGACTTGAACAT
AACTCATCTGACTGCTTCTCTGTTAGTCAATCGCGGACTGGATACCGTGGAAGATGCCCGGTATTTTTTATTTGGAGCAA
AAAGCGAATTCCATGATCCCTTTTTGCTCAAGGACATGGATAAGGCAGTTGAGCGGATCAATGAGGCTATCAAAACGCAG
GAGCCCATTTTAGTATTCGGTGATTATGATGCAGATGGAGTGAGCAGTACGACGGTCATGATGAAAGCCCTGGACGAGCT
TGGGGCGAATGCCGACTACTACATACCGAACCGTTTTACAGAAGGATACGGTCCTAATGAAAAAGCGTTCCGCAGTGCCG
CAGACAGCGGAGTTGGTTTGATCATCACTGTTGATACGGGCATTTCTGCTCTTCATGAAGCTTCTGTTGCCAAAGAGGTA
GGCATCGACTTGGTTATAACGGACCATCATGAACCTGGACCGGTTCTGCCGGATGCATTTGCGATCATCCATCCAAAGCT
GGAAGACAGTGTATACCCTTTCAAGGATCTGGCTGGAGTCGGAGTTGCCTTTAAGGTAGCGCATGCACTGCTAAAAAGGG
TGCCGGAGCATTTGCTGGAATATGCGGCTATCGGGACAATTGCCGACCTTGTACCGCTCATGGGAGAGAACAGGCTGATT
GCCACGAGGGGAATTGAGAAATTGAAGTCGAGCCAGACGCCTGGTTTGAATGCACTGCTTAAACTCGCTAAGACGGATAG
ATCTTCCATTGATGAAGAAACGATTGGGTTCATGATAGGGCCGAGGGTTAACGCCGCGGGTAGACTTGGCAGCGCGGATC
CTGCTGTCCAATTAATGATGACACAAGATCCGGAAGAAGCGATGATGCTTGCGGAAGAAATTGATTCAATCAATAAAGAG
CGTCAAAACATAGTCTCACAAATTGCTGAAGAAGCAGTTGCTGAAGTGGAAATGAATTTTCCTATAAAAGATAATTCAGT
CCTAGTCGTCGGCAAAGAAGGCTGGAACGCAGGAGTCATTGGGATCGTAGCATCCAAGCTGGTTGAAAAATACTACCGGC
CAACGATTGTTCTTAGTTTTGACAATGAAAAGGGACTTGCCAAGGGTTCAGCACGCAGTATTGCAGGGTTCGATCTCTTT
AAAAATCTATCAACCTGCAGAGACATCCTGCCGCATTTTGGCGGACATCCGATGGCTGCGGGCATGACATTGAATTTAAG
TGATGTGGATGAATTAAGGAAAAGATTGAATTCACTCGCAAAAGAGCAGCTGAAAGAAGAAGATTTAATTCCTGTATCCC
ATATCGATGCCAGTATAGAAGTTAAAGAGATTACGATTGAAACCATAAATGAACTCGGAATGCTTTCACCATATGGTGTC
AGCAACCCTAAGCCCAAGGTCATGATCGAGGCGGCTAATATTTCAACCCTCAGAAAGATCGGGGCGGATCAGTCACATTT
AAAGCTGGCGCTGGAAGAGGAAGGCAATGTGATCGATGGAATTGGCTTCGGTTTTGGCCATCTTCATGATCATATTTCAC
CTAGTTCCAAGCTGTCGGTCATTGGCGAACTGTCTATCAATGAATGGAACAATATCAAGAAGCCGCAGATCTTCCTCAGG
GATGTAGCGGTCAAATCCTGGCAGCTATTCGATTTCCGCGGACTTAAAAGACTGGACAAGCTTCCTGACATGATTCCAGG
GGATCATATCAAATGGATTCTCTTTAATCCCGACTTGAAAAATAAGTTTTCACCTATTATCGGAGACTCATTGGAAGTGG
TAACTGCCGAGGATCAGGCTCAACAGATCGAACTTGATCAATCATATGTTGTTTTATTGGATCTGCCTCCTTCCAAAGAG
ATTCTGGAGAATTTATTTTCCGGGAAAAATCCGGGAAGGGTATATGTCCATTTTTACAAAGAAAGCAGCGATTTCTTCAC
GACGATGCCAACCCGTGAGCACTTCAAATGGTTCTACGCGTTCCTTGCAAAGAAAGGGCCATTTGATCTGAAAAGGTATG
GCGACGATCTGGCCAAGCATAGAGGGTGGACAAAAGAAACAGTAGATTTCATGTCGCAGGTGTTTTTTGAACTAGATTTT
GTTAAAATAAACAATGGGTTTATTTCACTAGAAGAAAATGTCCCCAAAAGGGATCTGACTGAATCCAAAACATATCAGCA
CAAGGTGCAAGCATTCACTCTTGAAAATGAATTGCTCTACTCTTCGTATGAGCAATTGAAGAATTGGTTTGACCAATTCA
TCCAAGAGTCGGTGAAAAATGAGGAGGCAATTATTCAATGGATTTGA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.934

99.492

0.527