Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RH061_RS16785 Genome accession   NZ_CP134494
Coordinates   3319362..3321821 (-) Length   819 a.a.
NCBI ID   WP_311071881.1    Uniprot ID   -
Organism   Mesobacillus jeotgali strain PS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3314362..3326821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RH061_RS16760 (RH061_16760) - 3315773..3316852 (-) 1080 WP_311076438.1 AI-2E family transporter -
  RH061_RS16765 (RH061_16765) - 3317265..3317390 (-) 126 WP_251027810.1 YrzQ family protein -
  RH061_RS16770 (RH061_16770) - 3317424..3317615 (-) 192 WP_023627194.1 hypothetical protein -
  RH061_RS16775 (RH061_16775) - 3317625..3318101 (-) 477 WP_311071879.1 PRC-barrel domain-containing protein -
  RH061_RS16780 (RH061_16780) - 3318301..3319311 (+) 1011 WP_311071880.1 LysM peptidoglycan-binding domain-containing protein -
  RH061_RS16785 (RH061_16785) recD2 3319362..3321821 (-) 2460 WP_311071881.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RH061_RS16790 (RH061_16790) - 3321853..3322512 (-) 660 WP_311071883.1 tetratricopeptide repeat protein -
  RH061_RS16795 (RH061_16795) mnmA 3322672..3323787 (-) 1116 WP_311071884.1 tRNA 2-thiouridine(34) synthase MnmA -
  RH061_RS16800 (RH061_16800) - 3323850..3325004 (-) 1155 WP_311071885.1 cysteine desulfurase family protein -
  RH061_RS16805 (RH061_16805) cymR 3325285..3325707 (-) 423 WP_041967745.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 819 a.a.        Molecular weight: 92330.01 Da        Isoelectric Point: 4.6362

>NTDB_id=880443 RH061_RS16785 WP_311071881.1 3319362..3321821(-) (recD2) [Mesobacillus jeotgali strain PS1]
MDKQDSLDLFSEQGKFMKGKHLVTIFHNEQNLYTVLRIRVEETNEQYEDKEAVITGYFPRIHEQESYIFFGEIKEHPKFG
AQFHATHFRKDLPQSKQGIISYLSSDLFKGIGKKTAEKIVDTLGEKAITRIIENPSVLDQIPKLAPEKAKELYDTLMEHQ
GLEQVMVALNEYGFGPQLSMKIYQVYKENAIEVIQNNPYKLVEDIEGIGFGRADELGSQLGLTGNHPDRIKAACLYTLES
SSIQGGHVFMEAEELLVDVKKLLEDNQNIEIEFTDISNEIIKLGEEGKLVAEEQRVYLPSLYYSEKGLVVNIKRILEQTE
YENQFPESEFLLALGELEERLGVQYGPSQKEAIQTALMSPMMILTGGPGTGKTTVIKGIVELYAELHGCSLDPKDYKKEE
PYPFLLAAPTGRAAKRMTESTGLPAVTIHRLLRWNGAEGFDHDEDQPLDGKILIIDETSMVDIWLAHQLFKSLPDNIQVI
VVGDEDQLPSVGPGQVLKDLLDSGRVPTVRLTDIYRQAEGSSIIELAHQIKNGSLPEDISAQQPDRSFIKCTTSQIPQVV
EKVVANAKKKGYSPRNIQVLAPMYRGPAGIDRLNELLQELFNPNDDGTRKELAFGDVKYRIGDKVLQLVNQPEANVFNGD
MGEVVAIFYAKENTEKQDQLIVSFDGIEVTYNRPDLSQITHAYCCSVHKSQGSEFPIVVLPVVKSYYRMLRRNLIYTAIT
RSKQFLILVGEEDALKMGIERGEDTARNTTLVEKLVQLLPELQGETETNELSMRQPEPKLQSEHSDKDEEVDYLDIIKKA
DPMIGMGNLTPYDFMEEGS

Nucleotide


Download         Length: 2460 bp        

>NTDB_id=880443 RH061_RS16785 WP_311071881.1 3319362..3321821(-) (recD2) [Mesobacillus jeotgali strain PS1]
TTGGACAAACAGGACTCGCTTGATTTGTTTTCAGAACAGGGGAAGTTCATGAAAGGAAAACATCTTGTTACCATTTTTCA
TAATGAACAAAATCTTTACACAGTCCTGAGGATCAGGGTCGAGGAAACAAATGAGCAGTACGAGGATAAAGAAGCGGTCA
TAACAGGGTATTTCCCCCGGATTCATGAACAAGAGTCTTACATTTTCTTCGGTGAGATAAAAGAGCATCCTAAGTTCGGT
GCACAATTCCATGCGACTCATTTCCGCAAGGATTTGCCACAGTCAAAGCAAGGGATCATCAGCTACCTTTCAAGTGATCT
ATTCAAGGGGATTGGAAAGAAAACGGCTGAGAAGATTGTCGATACGCTCGGGGAAAAGGCGATAACCAGGATTATCGAGA
ACCCGTCAGTCCTTGACCAAATTCCGAAACTGGCACCTGAAAAAGCTAAGGAACTGTATGACACATTGATGGAGCATCAG
GGCCTTGAACAAGTGATGGTGGCATTGAACGAATATGGTTTTGGCCCTCAGCTGTCGATGAAGATTTATCAGGTCTATAA
AGAAAATGCGATTGAAGTGATTCAGAACAACCCTTATAAGCTCGTGGAGGATATCGAAGGCATCGGTTTCGGCAGGGCGG
ACGAGCTAGGGAGTCAGCTCGGCCTTACGGGCAACCATCCGGATCGGATCAAGGCGGCCTGTCTATATACCCTAGAGAGT
TCTAGTATCCAGGGCGGACATGTTTTCATGGAAGCAGAAGAGCTGCTCGTCGATGTGAAAAAACTGCTTGAGGACAATCA
GAATATAGAAATAGAATTCACTGATATCTCGAACGAAATCATTAAGCTTGGTGAAGAAGGTAAGCTGGTTGCCGAAGAGC
AGAGAGTCTATTTGCCGTCCCTTTATTATTCGGAAAAAGGCCTGGTTGTGAATATCAAAAGGATTCTTGAGCAAACAGAA
TATGAAAATCAATTTCCTGAATCGGAGTTTCTTCTTGCACTTGGAGAGCTTGAGGAGCGTTTGGGTGTCCAGTACGGACC
AAGCCAGAAGGAAGCGATCCAGACAGCGCTGATGTCACCAATGATGATCCTGACAGGCGGCCCCGGCACGGGGAAAACGA
CGGTCATCAAGGGGATCGTAGAGCTATATGCAGAGCTTCACGGTTGTTCGCTGGACCCAAAGGATTATAAAAAAGAAGAG
CCGTATCCCTTCTTGCTTGCAGCTCCGACCGGCCGGGCGGCTAAGAGGATGACTGAGTCAACCGGGCTGCCTGCCGTGAC
CATCCATAGGCTGCTGCGCTGGAATGGTGCGGAAGGATTTGACCATGATGAAGACCAGCCGCTAGATGGGAAGATTCTGA
TTATCGATGAAACATCAATGGTTGATATATGGCTGGCACATCAATTGTTCAAATCGCTGCCTGACAATATTCAGGTCATC
GTGGTGGGAGATGAAGACCAGCTCCCATCTGTAGGTCCTGGCCAGGTACTAAAGGATCTATTGGATTCAGGAAGGGTCCC
GACGGTCAGGCTGACGGATATTTACAGACAGGCTGAAGGCTCTTCAATCATCGAACTTGCACACCAAATCAAAAATGGAT
CCCTGCCAGAGGATATTTCCGCACAACAGCCAGACCGTTCGTTTATAAAGTGTACAACGAGCCAGATTCCCCAGGTAGTT
GAAAAAGTTGTCGCAAATGCCAAAAAGAAAGGGTATTCTCCAAGGAATATCCAGGTGCTGGCGCCAATGTACCGGGGCCC
GGCTGGCATTGACCGTTTGAATGAACTATTGCAGGAACTGTTCAATCCGAATGATGATGGTACCAGGAAAGAGCTTGCAT
TCGGCGATGTAAAATACCGCATCGGCGATAAAGTCCTCCAGCTGGTCAATCAGCCTGAAGCCAATGTTTTCAATGGTGAT
ATGGGTGAAGTTGTCGCGATATTTTACGCAAAGGAAAACACCGAAAAACAAGATCAGCTGATCGTTTCCTTTGACGGAAT
TGAAGTCACCTATAACAGGCCGGACCTGTCGCAAATCACCCACGCATATTGCTGTTCCGTGCATAAATCCCAGGGCAGTG
AATTTCCGATCGTCGTTCTGCCGGTGGTAAAAAGCTACTACAGGATGCTGCGCAGGAATTTGATTTATACCGCGATTACC
AGGAGTAAGCAATTCCTCATACTGGTTGGCGAAGAGGATGCGCTGAAAATGGGGATTGAACGTGGTGAAGATACTGCAAG
GAATACTACGCTCGTTGAAAAACTTGTACAATTACTGCCTGAACTGCAAGGTGAAACAGAAACAAACGAACTAAGCATGC
GACAGCCAGAACCTAAGCTACAAAGCGAACATTCCGATAAAGACGAAGAAGTCGATTATCTCGACATCATCAAAAAAGCT
GACCCGATGATCGGGATGGGAAACCTGACTCCTTATGATTTTATGGAGGAAGGGAGCTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

AAA domain (AAA_30)

(345-553)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.84

99.512

0.615