Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   KDR_RS09560 Genome accession   NZ_CP150840
Coordinates   1919927..1921231 (+) Length   434 a.a.
NCBI ID   WP_010888533.1    Uniprot ID   Q9RT67
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1914927..1926231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDR_RS09530 coaE 1915403..1916026 (+) 624 WP_010888527.1 dephospho-CoA kinase -
  KDR_RS09535 - 1916144..1917085 (-) 942 WP_034350050.1 peptidylprolyl isomerase -
  KDR_RS09540 - 1917186..1917674 (-) 489 WP_027479805.1 Lrp/AsnC family transcriptional regulator -
  KDR_RS09545 ald 1917839..1918945 (+) 1107 WP_027479806.1 alanine dehydrogenase -
  KDR_RS09550 - 1918991..1919266 (+) 276 WP_165439358.1 hypothetical protein -
  KDR_RS09555 - 1919424..1919822 (-) 399 WP_010888532.1 hypothetical protein -
  KDR_RS09560 rarA 1919927..1921231 (+) 1305 WP_010888533.1 replication-associated recombination protein A Machinery gene
  KDR_RS09565 - 1921274..1921462 (-) 189 WP_027479807.1 hypothetical protein -
  KDR_RS09570 - 1921530..1922099 (-) 570 WP_010888534.1 DUF1572 family protein -
  KDR_RS09575 - 1922117..1922755 (-) 639 WP_010888535.1 hypothetical protein -
  KDR_RS09580 - 1922739..1923227 (-) 489 WP_010888536.1 hypothetical protein -
  KDR_RS09585 - 1923456..1925603 (-) 2148 WP_010888537.1 ATP-dependent RecD-like DNA helicase -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 47050.45 Da        Isoelectric Point: 5.4977

>NTDB_id=880424 KDR_RS09560 WP_010888533.1 1919927..1921231(+) (rarA) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
MTLFDPPAPLAERLRPRTVAEVAGQSHLLGAGKPLTRVLQSGRLGSLILWGPPGVGKTTLARLLAGEVGAHFIALSAVSA
GVKDVRDAVAEAEREQARGRRTVLFLDEIHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVNPALRSRARTLVLEALS
PEDVLALLRRALSDERGLPGVEAEDSALELLARLAEGDARRALSTLEVAATLANPVTEEAVTEAFGRHLPAMDKNGEDFY
NLISALHKSVRASHPDAALYWLARMLQGGADPHYVARRIVRMASEDIGLADPQALRLTIAARDSMEFLGSPEGDLALAQA
VVYLALAPKSNSVYVAWKKTVRAVQEGESLPVPLHLRNAPTALMKGQGYGRGYAYYFDDPAGSFEQNYLPDGVQLDLYQP
TGEGWEARMTERWRKLMTAHGELAPEAEEQSAEN

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=880424 KDR_RS09560 WP_010888533.1 1919927..1921231(+) (rarA) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
GTGACGCTCTTTGACCCGCCTGCTCCCCTCGCCGAACGCCTGCGCCCGCGCACCGTGGCCGAGGTGGCCGGGCAGTCGCA
CCTGCTCGGGGCCGGCAAGCCGCTGACGCGCGTGCTGCAAAGTGGCCGCCTGGGGTCGCTGATTTTGTGGGGGCCGCCCG
GCGTGGGCAAAACGACGCTGGCGCGGCTGCTCGCGGGCGAAGTCGGCGCGCACTTCATCGCGCTTTCGGCGGTGTCGGCG
GGCGTGAAGGACGTGCGCGACGCGGTAGCCGAGGCCGAGCGTGAACAGGCGCGGGGCCGGCGCACGGTGCTGTTTCTGGA
CGAGATTCACCGCTTCAACAAGGCTCAGCAAGACGCCCTGCTGCCCCACGTGGAGTCGGGGCTGCTCACCCTGATTGGCG
CGACCACCGAGAACCCAAGTTTCGAGGTCAACCCGGCGCTGCGCTCACGGGCCCGGACGCTGGTGCTCGAAGCGCTCTCG
CCGGAGGACGTGCTCGCCCTGCTGCGCCGCGCCCTGAGCGACGAGCGCGGGCTGCCGGGGGTGGAGGCGGAGGACAGCGC
CTTGGAACTGCTCGCCCGTCTTGCCGAAGGCGACGCCCGCCGCGCCCTGAGTACGCTCGAAGTCGCCGCCACCCTCGCCA
ATCCGGTGACCGAGGAAGCCGTGACCGAGGCGTTCGGACGTCACCTGCCGGCGATGGACAAGAACGGCGAGGACTTCTAC
AACCTGATTTCGGCGCTGCACAAGTCGGTGCGGGCCTCGCACCCCGACGCGGCGCTGTACTGGCTGGCGCGAATGCTTCA
GGGTGGCGCCGACCCGCACTACGTCGCTCGGCGCATCGTCCGCATGGCGTCGGAGGACATCGGGCTGGCCGACCCGCAAG
CACTCCGGCTGACCATCGCGGCGCGCGACAGCATGGAATTTCTGGGCAGTCCCGAAGGCGACCTCGCGCTGGCGCAGGCA
GTGGTGTACCTCGCCCTCGCGCCCAAGAGCAACAGCGTGTACGTGGCCTGGAAAAAGACTGTGCGCGCCGTGCAGGAAGG
CGAATCGCTGCCCGTGCCGCTGCACCTGCGCAACGCGCCCACCGCGCTGATGAAAGGGCAGGGCTATGGCCGGGGCTACG
CCTACTATTTCGACGACCCGGCAGGCTCCTTCGAGCAAAATTACCTGCCCGACGGCGTGCAGCTCGACCTCTATCAACCG
ACCGGCGAAGGTTGGGAAGCCCGCATGACCGAGCGCTGGCGCAAGCTGATGACGGCGCACGGCGAGCTGGCGCCAGAAGC
AGAAGAGCAGAGCGCGGAGAACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(253-416)

AAA C-terminal domain (AAA_assoc_2)

(181-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(47-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RT67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.192

97.005

0.38