Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   RJW51_RS02260 Genome accession   NZ_CP134491
Coordinates   446822..447661 (-) Length   279 a.a.
NCBI ID   WP_172090142.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 441822..452661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS02245 (RJW51_02235) pheT 442353..444752 (-) 2400 WP_172090143.1 phenylalanine--tRNA ligase subunit beta -
  RJW51_RS02250 (RJW51_02240) - 444754..445275 (-) 522 WP_172090156.1 GNAT family N-acetyltransferase -
  RJW51_RS02255 (RJW51_02245) pheS 445475..446518 (-) 1044 WP_024392320.1 phenylalanine--tRNA ligase subunit alpha -
  RJW51_RS02260 (RJW51_02250) endA 446822..447661 (-) 840 WP_172090142.1 DNA/RNA non-specific endonuclease Machinery gene
  RJW51_RS02265 (RJW51_02255) - 447691..447882 (-) 192 WP_172090141.1 DNA-directed RNA polymerase subunit beta -
  RJW51_RS02270 (RJW51_02260) murA 447875..449158 (-) 1284 WP_172090140.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RJW51_RS02275 (RJW51_02265) - 449181..449408 (-) 228 WP_032538280.1 DUF1146 family protein -
  RJW51_RS02280 (RJW51_02270) - 449468..449884 (-) 417 WP_024392324.1 F0F1 ATP synthase subunit epsilon -
  RJW51_RS02285 (RJW51_02275) atpD 449894..451300 (-) 1407 WP_024392325.1 F0F1 ATP synthase subunit beta -
  RJW51_RS02290 (RJW51_02280) - 451322..452200 (-) 879 WP_172090139.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30296.54 Da        Isoelectric Point: 6.3492

>NTDB_id=880354 RJW51_RS02260 WP_172090142.1 446822..447661(-) (endA) [Streptococcus parasuis strain 1628469]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNLADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINRNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYRSGEITVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=880354 RJW51_RS02260 WP_172090142.1 446822..447661(-) (endA) [Streptococcus parasuis strain 1628469]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTTTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTGAGCGATAACAAGAGCAGTAACCTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAGAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACAGGAATCAGACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGCGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTACTTGGTTATGCTTTGATTGGTGGATTGTCTGGCTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCCAACGATCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGTCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTTCAGAGCGGTCTCAG
TATCAACTATCGTAGTGGGGAAATTACGGTGAATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(82-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.339

84.588

0.595
  endA Streptococcus pneumoniae D39

70.339

84.588

0.595
  endA Streptococcus pneumoniae R6

70.339

84.588

0.595
  endA Streptococcus pneumoniae TIGR4

70.339

84.588

0.595