Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   RJW49_RS04845 Genome accession   NZ_CP134477
Coordinates   920293..921132 (+) Length   279 a.a.
NCBI ID   WP_074393722.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 915293..926132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS04815 (RJW49_04815) - 915758..916636 (+) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -
  RJW49_RS04820 (RJW49_04820) atpD 916656..918062 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  RJW49_RS04825 (RJW49_04825) - 918072..918488 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  RJW49_RS04830 (RJW49_04830) - 918548..918772 (+) 225 WP_024387485.1 DUF1146 family protein -
  RJW49_RS04835 (RJW49_04835) murA 918796..920079 (+) 1284 WP_074393721.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RJW49_RS04840 (RJW49_04840) - 920072..920263 (+) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  RJW49_RS04845 (RJW49_04845) endA 920293..921132 (+) 840 WP_074393722.1 DNA/RNA non-specific endonuclease Machinery gene
  RJW49_RS04850 (RJW49_04850) - 921319..922872 (+) 1554 WP_074393723.1 MFS transporter -
  RJW49_RS04855 (RJW49_04855) - 922928..923956 (+) 1029 WP_014735754.1 sugar kinase -
  RJW49_RS04860 (RJW49_04860) uidA 923972..925771 (+) 1800 WP_074393724.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30147.34 Da        Isoelectric Point: 6.2370

>NTDB_id=880214 RJW49_RS04845 WP_074393722.1 920293..921132(+) (endA) [Streptococcus suis strain NLS40]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNSA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWAPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLTINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=880214 RJW49_RS04845 WP_074393722.1 920293..921132(+) (endA) [Streptococcus suis strain NLS40]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTGGCGGGGGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCGAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATAGCGCT
GGAGCATTTATTATTAACGGTAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAGACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGGCACCTGCGGGTTGGCATCAAATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAAAATTATTTTGAAAGTCAGATTC
GGCGTGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCTTAGAGTTCAATGTGTTCGTTCCAAATGTTCAGAGCGGTCTCAC
TATCAATTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.492

84.588

0.588
  endA Streptococcus pneumoniae D39

69.492

84.588

0.588
  endA Streptococcus pneumoniae R6

69.492

84.588

0.588
  endA Streptococcus pneumoniae TIGR4

69.492

84.588

0.588