Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   RJW55_RS04365 Genome accession   NZ_CP134473
Coordinates   922771..923610 (+) Length   279 a.a.
NCBI ID   WP_044690565.1    Uniprot ID   A0A0Z8I530
Organism   Streptococcus suis strain TMW_SS028     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 917771..928610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS04335 (RJW55_04335) - 918236..919114 (+) 879 WP_172045688.1 F0F1 ATP synthase subunit gamma -
  RJW55_RS04340 (RJW55_04340) atpD 919134..920540 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  RJW55_RS04345 (RJW55_04345) - 920550..920966 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  RJW55_RS04350 (RJW55_04350) - 921026..921250 (+) 225 WP_099877511.1 DUF1146 family protein -
  RJW55_RS04355 (RJW55_04355) murA 921274..922557 (+) 1284 WP_044690564.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RJW55_RS04360 (RJW55_04360) - 922550..922741 (+) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  RJW55_RS04365 (RJW55_04365) endA 922771..923610 (+) 840 WP_044690565.1 DNA/RNA non-specific endonuclease Machinery gene
  RJW55_RS04370 (RJW55_04370) - 923797..925347 (+) 1551 WP_029176959.1 MFS transporter -
  RJW55_RS04375 (RJW55_04375) - 925410..926438 (+) 1029 WP_044774188.1 sugar kinase -
  RJW55_RS04380 (RJW55_04380) uidA 926454..928253 (+) 1800 WP_172034403.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30065.37 Da        Isoelectric Point: 7.4544

>NTDB_id=880168 RJW55_RS04365 WP_044690565.1 922771..923610(+) (endA) [Streptococcus suis strain TMW_SS028]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVANYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNKTDLDASVSSKPYADNKTKTVQGGTVPTVANALLAKSTRQYKSREETGNGSTSWTPPGWHQVQDLDGSYDHA
IDRGHLLGYALIGGLKGFDASTSNPKNIAVQTAWSNQARAEDSTGQNYFESQVRKALDKNKRVRYRVTLIYADEDELVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=880168 RJW55_RS04365 WP_044690565.1 922771..923610(+) (endA) [Streptococcus suis strain TMW_SS028]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGTTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTAATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGAAATAAGACTGATTTAGATGCTTCAGTCTCTAGTAAGCCCTATGCGGATAATAAGACAAA
GACTGTGCAGGGGGGAACGGTTCCAACAGTGGCAAATGCCCTTTTAGCCAAATCAACGCGACAGTATAAGAGTCGTGAAG
AAACAGGAAATGGTTCGACTTCATGGACTCCGCCTGGCTGGCATCAGGTACAGGATTTGGATGGATCCTATGATCATGCG
ATTGATAGGGGGCATCTGCTGGGCTATGCCTTGATTGGCGGTTTAAAAGGCTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAATCAGGCAAGGGCTGAGGATTCGACGGGGCAAAACTATTTTGAGAGTCAAGTTC
GTAAAGCTTTGGATAAGAACAAACGTGTTCGTTACCGCGTGACCTTGATTTATGCTGATGAGGATGAGTTGGTTCCAGTC
GGAAGTCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8I530

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

73.729

84.588

0.624
  endA Streptococcus pneumoniae D39

73.729

84.588

0.624
  endA Streptococcus pneumoniae R6

73.729

84.588

0.624
  endA Streptococcus pneumoniae TIGR4

73.729

84.588

0.624