Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   RJW56_RS05340 Genome accession   NZ_CP134472
Coordinates   1101431..1102270 (+) Length   279 a.a.
NCBI ID   WP_023369907.1    Uniprot ID   A0A0Z8SMM0
Organism   Streptococcus suis strain 1522228     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1096431..1107270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS05310 (RJW56_05310) - 1096971..1097849 (+) 879 WP_105151816.1 F0F1 ATP synthase subunit gamma -
  RJW56_RS05315 (RJW56_05315) atpD 1097869..1099275 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  RJW56_RS05320 (RJW56_05320) - 1099285..1099701 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  RJW56_RS05325 (RJW56_05325) - 1099761..1099985 (+) 225 WP_024387485.1 DUF1146 family protein -
  RJW56_RS05330 (RJW56_05330) murA 1100009..1101184 (+) 1176 Protein_1007 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RJW56_RS05335 (RJW56_05335) - 1101210..1101401 (+) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  RJW56_RS05340 (RJW56_05340) endA 1101431..1102270 (+) 840 WP_023369907.1 DNA/RNA non-specific endonuclease Machinery gene
  RJW56_RS05345 (RJW56_05345) - 1102457..1104010 (+) 1554 WP_024394643.1 MFS transporter -
  RJW56_RS05350 (RJW56_05350) - 1104067..1105095 (+) 1029 WP_024394642.1 sugar kinase -
  RJW56_RS05355 (RJW56_05355) uidA 1105112..1106911 (+) 1800 WP_015646747.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30133.32 Da        Isoelectric Point: 6.2370

>NTDB_id=880116 RJW56_RS05340 WP_023369907.1 1101431..1102270(+) (endA) [Streptococcus suis strain 1522228]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=880116 RJW56_RS05340 WP_023369907.1 1101431..1102270(+) (endA) [Streptococcus suis strain 1522228]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGTAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCTGGTTGGCATCAAATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGTCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8SMM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.339

84.588

0.595
  endA Streptococcus pneumoniae D39

70.339

84.588

0.595
  endA Streptococcus pneumoniae R6

70.339

84.588

0.595
  endA Streptococcus pneumoniae TIGR4

70.339

84.588

0.595