Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   RJ558_RS00825 Genome accession   NZ_CP134397
Coordinates   174125..174388 (+) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain ICDC15003s     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 169125..179388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ558_RS00800 (RJ558_00800) groES 169411..169767 (-) 357 WP_000671945.1 co-chaperone GroES -
  RJ558_RS00805 (RJ558_00805) dnaG 170053..171732 (+) 1680 WP_310957695.1 DNA primase -
  RJ558_RS00810 (RJ558_00810) - 171729..172781 (+) 1053 WP_180662604.1 argininosuccinate synthase domain-containing protein -
  RJ558_RS00815 (RJ558_00815) - 172870..173697 (+) 828 WP_180662606.1 DUF5718 family protein -
  RJ558_RS00820 (RJ558_00820) comB2 173844..174125 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  RJ558_RS00825 (RJ558_00825) comB3 174125..174388 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  RJ558_RS00830 (RJ558_00830) comB4 174390..176753 (+) 2364 WP_180662607.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  RJ558_RS00840 (RJ558_00840) - 177055..178395 (+) 1341 WP_310957699.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=879944 RJ558_RS00825 WP_000584956.1 174125..174388(+) (comB3) [Helicobacter pylori strain ICDC15003s]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=879944 RJ558_RS00825 WP_000584956.1 174125..174388(+) (comB3) [Helicobacter pylori strain ICDC15003s]
ATGATTATTCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCAGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1