Detailed information NTG0879906

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: RJ559_RS00930
• Genome accession: NZ_CP134395
• Coordinates: 196517..197572 (+)
• Length: 351 a.a.
• NCBI ID: WP_310958088.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ICDC15003-8-2
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 191517..202572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJ559_RS00900 (RJ559_00900)	-	191933..192346 (+)	414	WP_001023008.1	universal stress protein	-
RJ559_RS00905 (RJ559_00905)	-	192361..192636 (+)	276	WP_000784908.1	ATP-dependent Clp protease adaptor ClpS	-
RJ559_RS00910 (RJ559_00910)	-	192636..194861 (+)	2226	WP_310957714.1	ATP-dependent Clp protease ATP-binding subunit	-
RJ559_RS00915 (RJ559_00915)	panD	194851..195201 (+)	351	WP_180662627.1	aspartate 1-decarboxylase	-
RJ559_RS00920 (RJ559_00920)	-	195212..195505 (+)	294	WP_000347919.1	YbaB/EbfC family nucleoid-associated protein	-
RJ559_RS00925 (RJ559_00925)	-	195505..196509 (+)	1005	WP_310957715.1	PDZ domain-containing protein	-
RJ559_RS00930 (RJ559_00930)	comB6	196517..197572 (+)	1056	WP_310958088.1	P-type conjugative transfer protein TrbL	Machinery gene
RJ559_RS00935 (RJ559_00935)	comB7	197588..197701 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
RJ559_RS00940 (RJ559_00940)	comB8	197698..198441 (+)	744	WP_001208395.1	virB8 family protein	Machinery gene
RJ559_RS00945 (RJ559_00945)	comB9	198441..199424 (+)	984	WP_180662630.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
RJ559_RS00950 (RJ559_00950)	comB10	199417..200553 (+)	1137	WP_310957716.1	DNA type IV secretion system protein ComB10	Machinery gene
RJ559_RS00955 (RJ559_00955)	-	200623..202035 (+)	1413	WP_180662633.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39759.65 Da
• Isoelectric Point: 8.8165

>NTDB_id=879906 RJ559_RS00930 WP_310958088.1 196517..197572(+) (comB6) [Helicobacter pylori strain ICDC15003-8-2]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALINAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNSSANLSQNALNSLQYITTPPASSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=879906 RJ559_RS00930 WP_310958088.1 196517..197572(+) (comB6) [Helicobacter pylori strain ICDC15003-8-2]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATCAACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTCGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGCGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.291	100	0.983