Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   RJ564_RS00825 Genome accession   NZ_CP134394
Coordinates   173848..174129 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain ICDC15003-50-1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 168848..179129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ564_RS00805 (RJ564_00805) groES 169415..169771 (-) 357 WP_000671945.1 co-chaperone GroES -
  RJ564_RS00810 (RJ564_00810) dnaG 170057..171736 (+) 1680 WP_310957695.1 DNA primase -
  RJ564_RS00815 (RJ564_00815) - 171733..172785 (+) 1053 WP_180662604.1 argininosuccinate synthase domain-containing protein -
  RJ564_RS00820 (RJ564_00820) - 172874..173701 (+) 828 WP_180662606.1 DUF5718 family protein -
  RJ564_RS00825 (RJ564_00825) comB2 173848..174129 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  RJ564_RS00830 (RJ564_00830) comB3 174129..174392 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  RJ564_RS00835 (RJ564_00835) comB4 174394..176757 (+) 2364 WP_180662607.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  RJ564_RS00845 (RJ564_00845) - 177059..178399 (+) 1341 WP_310957699.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=879883 RJ564_RS00825 WP_001272690.1 173848..174129(+) (comB2) [Helicobacter pylori strain ICDC15003-50-1]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=879883 RJ564_RS00825 WP_001272690.1 173848..174129(+) (comB2) [Helicobacter pylori strain ICDC15003-50-1]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCTCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGGATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1