Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RJD38_RS06915 Genome accession   NZ_CP134271
Coordinates   1516382..1517089 (+) Length   235 a.a.
NCBI ID   WP_406853071.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 20FBVib0200     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1511382..1522089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD38_RS06895 (RJD38_06895) greB 1511755..1512243 (+) 489 WP_005596926.1 transcription elongation factor GreB -
  RJD38_RS06900 (RJD38_06900) - 1512403..1514733 (+) 2331 WP_065545867.1 Tex family protein -
  RJD38_RS06905 (RJD38_06905) - 1514865..1515335 (-) 471 WP_005596930.1 hypothetical protein -
  RJD38_RS06910 (RJD38_06910) bioH 1515427..1516269 (-) 843 WP_065545866.1 pimeloyl-ACP methyl ester esterase BioH -
  RJD38_RS06915 (RJD38_06915) comF 1516382..1517089 (+) 708 WP_406853071.1 ComF family protein Machinery gene
  RJD38_RS06920 (RJD38_06920) nfuA 1517197..1517784 (+) 588 WP_005596938.1 Fe-S biogenesis protein NfuA -
  RJD38_RS06925 (RJD38_06925) nudE 1518029..1518577 (+) 549 WP_005596939.1 ADP compounds hydrolase NudE -
  RJD38_RS06930 (RJD38_06930) cysQ 1518603..1519430 (+) 828 WP_005596941.1 3'(2'),5'-bisphosphate nucleotidase CysQ -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26868.36 Da        Isoelectric Point: 8.8433

>NTDB_id=879561 RJD38_RS06915 WP_406853071.1 1516382..1517089(+) (comF) [Vibrio scophthalmi strain 20FBVib0200]
MLIQWWQKNRQHVLAHYCQHCLLPIEGRDQPGPGSWLLCQACLEGLSIPSRCQCCGMTTLHPVAQCGHCLSQPPAWRQLY
CVGDYTPPLSDYVQQLKFARQLHYVEVLADLLALKIQPNIQMITYVPLHWHRQLWRGFNQSEFLARALAQRLGLPCRALF
KRTRATRSQRGMDRLQRQRNLRGAFTLTKSVTELQSVAIVDDVVTTGSTVQQLCKLLLDAGVKSVDIYCICRTPE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=879561 RJD38_RS06915 WP_406853071.1 1516382..1517089(+) (comF) [Vibrio scophthalmi strain 20FBVib0200]
ATGTTAATCCAATGGTGGCAGAAAAACAGACAGCATGTGCTGGCTCATTATTGCCAACACTGTTTGCTGCCGATAGAGGG
GCGTGACCAGCCAGGCCCTGGGTCATGGTTATTGTGCCAAGCGTGCTTGGAAGGACTAAGCATACCGTCTCGTTGCCAGT
GTTGTGGTATGACAACGCTTCATCCGGTTGCTCAATGTGGTCATTGTTTGTCGCAACCGCCAGCTTGGCGGCAACTCTAT
TGTGTTGGTGACTACACGCCGCCATTGTCCGATTATGTTCAGCAATTAAAGTTTGCTCGTCAGCTGCATTATGTTGAGGT
ATTGGCCGATCTGCTTGCTCTAAAAATCCAACCAAATATTCAGATGATCACTTATGTACCCTTACACTGGCATCGGCAAT
TGTGGCGTGGATTTAATCAAAGTGAATTTCTAGCGCGAGCGTTGGCGCAGCGACTCGGTCTTCCTTGCCGAGCATTGTTT
AAGCGTACTCGTGCTACTCGTTCGCAACGGGGTATGGATCGCCTGCAACGACAACGTAATTTACGTGGCGCATTTACGCT
GACGAAAAGTGTTACTGAACTTCAATCCGTCGCGATTGTTGATGATGTAGTGACGACAGGGAGTACTGTGCAGCAATTAT
GCAAATTACTACTTGATGCTGGAGTTAAAAGTGTTGATATTTACTGTATCTGCCGTACTCCTGAATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

50.424

100

0.506
  comF Vibrio campbellii strain DS40M4

46.444

100

0.472