Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RI131_RS00065 Genome accession   NZ_CP134216
Coordinates   11947..12537 (+) Length   196 a.a.
NCBI ID   WP_005709832.1    Uniprot ID   A0A0J6XXP0
Organism   Lacticaseibacillus rhamnosus strain VHProbi M12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6947..17537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI131_RS00035 (RI131_00035) - 9427..9525 (+) 99 Protein_6 single-stranded DNA-binding protein -
  RI131_RS00040 (RI131_00040) - 9902..10132 (+) 231 WP_005690384.1 hypothetical protein -
  RI131_RS00045 (RI131_00045) - 10227..10739 (+) 513 WP_223804855.1 PedC/BrcD family bacteriocin maturation disulfide isomerase -
  RI131_RS00050 (RI131_00050) - 10867..10953 (-) 87 Protein_9 deoxyribose-phosphate aldolase -
  RI131_RS00055 (RI131_00055) ssb 11063..11494 (+) 432 WP_005690380.1 single-stranded DNA-binding protein -
  RI131_RS00060 (RI131_00060) rpsF 11621..11917 (+) 297 WP_005685677.1 30S ribosomal protein S6 -
  RI131_RS00065 (RI131_00065) ssb 11947..12537 (+) 591 WP_005709832.1 single-stranded DNA-binding protein Machinery gene
  RI131_RS00070 (RI131_00070) rpsR 12629..12865 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  RI131_RS00075 (RI131_00075) - 13259..13765 (-) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  RI131_RS00080 (RI131_00080) - 14076..15554 (+) 1479 WP_031546884.1 cytochrome ubiquinol oxidase subunit I -
  RI131_RS00085 (RI131_00085) cydB 15547..16566 (+) 1020 WP_014568875.1 cytochrome d ubiquinol oxidase subunit II -
  RI131_RS00090 (RI131_00090) - 16606..16800 (+) 195 WP_005707490.1 hypothetical protein -
  RI131_RS00095 (RI131_00095) - 16879..17136 (-) 258 WP_015764802.1 hypothetical protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20932.66 Da        Isoelectric Point: 4.9056

>NTDB_id=879364 RI131_RS00065 WP_005709832.1 11947..12537(+) (ssb) [Lacticaseibacillus rhamnosus strain VHProbi M12]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=879364 RI131_RS00065 WP_005709832.1 11947..12537(+) (ssb) [Lacticaseibacillus rhamnosus strain VHProbi M12]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6XXP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

100

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.749

100

0.505