Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RIN70_RS08180 Genome accession   NZ_CP134147
Coordinates   1627766..1629568 (-) Length   600 a.a.
NCBI ID   WP_195623371.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1622766..1634568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS08165 (RIN70_08165) - 1624178..1624804 (-) 627 WP_049487923.1 GNAT family N-acetyltransferase -
  RIN70_RS08170 (RIN70_08170) - 1624888..1625403 (-) 516 WP_070665527.1 phosphatase PAP2 family protein -
  RIN70_RS08175 (RIN70_08175) rcrQ 1626013..1627773 (-) 1761 WP_195623372.1 ABC transporter ATP-binding protein Regulator
  RIN70_RS08180 (RIN70_08180) rcrP 1627766..1629568 (-) 1803 WP_195623371.1 ABC transporter ATP-binding protein Regulator
  RIN70_RS08185 (RIN70_08185) - 1629565..1630011 (-) 447 WP_021153785.1 MarR family winged helix-turn-helix transcriptional regulator -
  RIN70_RS08190 (RIN70_08190) - 1630147..1630557 (-) 411 WP_049507051.1 peptide deformylase -
  RIN70_RS08195 (RIN70_08195) scrK 1630805..1631704 (-) 900 WP_003016958.1 fructokinase ScrK -
  RIN70_RS08200 (RIN70_08200) - 1631864..1633783 (-) 1920 WP_195623370.1 sucrose-specific PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66358.13 Da        Isoelectric Point: 8.9177

>NTDB_id=878884 RIN70_RS08180 WP_195623371.1 1627766..1629568(-) (rcrP) [Streptococcus parasanguinis strain 30.8.10]
MINIFRRLTAKEWGMIALSTVFICLAVWMDLKTPEYLSDITTLLAKDGTKVSDIMDPGSKMLLFSFGSFLMAVFVGFLAS
RVAASFTTRLRGEIFHQVMDYSDAEIKKFSVPSLLTRTTNDLTQLQIMIVMGMQVVTRGPIMAIWALTKIWGKSSAWTTS
VGIAVLMVLILLSVLVLIAFPRQQKVQGLTDALNATTRESLTGVRVVRAYNAEAYQNEKFQAENKGLTRLNLFVYRLMSL
MNPVMTVVSSGLTLAIYWIGAHLINDIAMPKDPTKLAVSSALADRTKVFSDMITFSSYAMQVVVGFMMMVAILIILPRAL
VSAKRINQVLALEPSVDFPSESKTESGEKGSVEFQDVSFRYGRTSRAMIEHVTFSAQKGQTVAFIGSTGSGKSTLVNLIP
RFYDATEGKILVDGVNVKDYSHQELNNKVGYIPQKAVLFSGTIRSNMEFGESSQGKLEDEAIWKALELAQAKEFVATKEK
GLDTEVAQGGSNFSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRQALKEELADTTKLIVAQRISTIMDADLI
LVLDQGKVVGQGTHKELLATNEVYQEIAYSQLSKEELEHA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=878884 RIN70_RS08180 WP_195623371.1 1627766..1629568(-) (rcrP) [Streptococcus parasanguinis strain 30.8.10]
ATGATCAATATATTTCGGCGGTTAACTGCCAAAGAATGGGGCATGATTGCCCTTAGTACGGTCTTTATCTGTCTGGCTGT
TTGGATGGATTTAAAGACTCCTGAATACTTATCCGATATCACGACCCTCTTAGCCAAGGATGGGACCAAGGTTTCTGATA
TTATGGATCCGGGAAGCAAGATGTTGCTCTTCTCTTTTGGAAGCTTTTTGATGGCAGTTTTTGTGGGCTTTTTGGCTTCA
AGAGTCGCTGCCAGCTTTACGACGCGACTTCGAGGAGAGATTTTCCATCAAGTGATGGATTACTCTGATGCCGAGATCAA
GAAATTCTCCGTTCCCTCTCTCTTGACTCGTACAACCAATGATTTGACCCAGTTACAAATCATGATTGTCATGGGGATGC
AAGTTGTGACGCGTGGTCCCATTATGGCGATTTGGGCTCTGACCAAGATTTGGGGGAAGAGCAGTGCCTGGACAACGTCT
GTTGGGATTGCGGTCTTGATGGTCTTGATTCTTCTCTCTGTTCTGGTTCTTATTGCCTTTCCGCGCCAGCAAAAGGTTCA
AGGTTTGACCGATGCTTTGAATGCGACGACACGGGAGAGTTTGACTGGGGTGCGAGTGGTTCGCGCCTACAATGCAGAAG
CTTATCAAAATGAGAAATTCCAGGCTGAAAACAAGGGCTTAACCCGTCTAAATCTCTTTGTTTATCGTTTGATGTCTTTG
ATGAACCCTGTCATGACAGTGGTATCAAGTGGGTTGACCCTTGCTATCTACTGGATTGGGGCGCACTTGATCAATGATAT
CGCCATGCCAAAAGATCCTACAAAGCTTGCCGTGAGTTCTGCCTTAGCGGATCGGACCAAGGTCTTCTCCGATATGATTA
CTTTCTCTTCTTACGCCATGCAGGTTGTCGTTGGCTTTATGATGATGGTGGCCATCTTGATTATTCTTCCTCGTGCCTTG
GTATCCGCAAAACGGATTAATCAGGTCTTGGCTCTAGAGCCGTCTGTTGATTTTCCATCTGAGTCCAAGACTGAGTCTGG
AGAAAAAGGAAGTGTAGAATTTCAAGATGTTTCCTTCCGATATGGAAGGACTTCCCGTGCTATGATTGAGCATGTTACCT
TTTCAGCTCAGAAGGGACAAACCGTTGCCTTCATTGGATCAACCGGCTCTGGTAAATCCACTTTGGTCAATTTAATTCCA
CGTTTTTACGATGCGACAGAAGGAAAGATCTTAGTGGATGGGGTGAATGTCAAGGATTATAGCCACCAAGAATTGAACAA
TAAAGTCGGCTACATTCCCCAAAAAGCAGTGCTCTTTAGCGGCACGATTCGCTCCAATATGGAATTTGGAGAAAGTAGTC
AAGGAAAATTAGAGGATGAAGCCATCTGGAAAGCTCTTGAATTGGCCCAAGCCAAAGAGTTTGTTGCCACAAAAGAGAAG
GGCTTGGATACAGAAGTAGCGCAAGGAGGAAGCAACTTCTCTGGAGGACAACGTCAACGTTTGGCCATTGCGCGTGCCCT
TGCACGTAAGCCCGAGATCCTCATCTTTGATGATTCCTTCTCAGCCCTGGATTACAAAACGGATCGGATCCTGCGCCAAG
CCCTGAAAGAAGAGCTGGCAGATACGACCAAATTGATCGTTGCCCAACGGATTTCGACCATTATGGATGCGGATTTGATT
TTGGTCTTGGATCAAGGGAAGGTCGTCGGTCAAGGCACCCACAAAGAATTGCTTGCGACCAATGAAGTCTATCAAGAAAT
TGCCTATTCACAATTGTCTAAGGAGGAGTTGGAACATGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-519)

ABC transporter transmembrane region (ABC_membrane)

(17-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

78.667

100

0.787