Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RI106_RS02165 Genome accession   NZ_CP134071
Coordinates   403071..403757 (+) Length   228 a.a.
NCBI ID   WP_310745932.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 4233     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 398071..408757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI106_RS02130 (RI106_02130) yqeH 398598..399698 (+) 1101 WP_045173041.1 ribosome biogenesis GTPase YqeH -
  RI106_RS02135 (RI106_02135) aroE 399712..400518 (+) 807 WP_045173040.1 shikimate dehydrogenase -
  RI106_RS02140 (RI106_02140) yhbY 400522..400812 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  RI106_RS02145 (RI106_02145) nadD 400815..401384 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  RI106_RS02150 (RI106_02150) yqeK 401374..401958 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  RI106_RS02155 (RI106_02155) rsfS 401959..402312 (+) 354 WP_001088020.1 ribosome silencing factor -
  RI106_RS02160 (RI106_02160) - 402315..403031 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  RI106_RS02165 (RI106_02165) comEA 403071..403757 (+) 687 WP_310745932.1 ComEA family DNA-binding protein Machinery gene
  RI106_RS02170 (RI106_02170) - 403849..404310 (+) 462 WP_000439693.1 ComE operon protein 2 -
  RI106_RS02175 (RI106_02175) comEC 404315..406516 (+) 2202 WP_045173038.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RI106_RS02180 (RI106_02180) holA 406573..407547 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  RI106_RS02185 (RI106_02185) rpsT 407592..407843 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25804.52 Da        Isoelectric Point: 9.7956

>NTDB_id=878670 RI106_RS02165 WP_310745932.1 403071..403757(+) (comEA) [Staphylococcus aureus strain 4233]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSAKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVAGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=878670 RI106_RS02165 WP_310745932.1 403071..403757(+) (comEA) [Staphylococcus aureus strain 4233]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGCAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTGCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.119

99.561

0.987
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961