Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   WOC71_RS00185 Genome accession   NZ_CP150754
Coordinates   31750..33024 (-) Length   424 a.a.
NCBI ID   WP_406818752.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22457     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26750..38024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC71_RS00160 (WOC71_00155) hisS 27311..28573 (+) 1263 WP_000590826.1 histidine--tRNA ligase -
  WOC71_RS00165 (WOC71_00160) aspS 28589..30355 (+) 1767 WP_000044799.1 aspartate--tRNA ligase -
  WOC71_RS00175 (WOC71_00170) - 30688..30816 (+) 129 WP_001790559.1 hypothetical protein -
  WOC71_RS00180 (WOC71_00175) - 30816..31589 (+) 774 WP_000682646.1 ThiF family adenylyltransferase -
  WOC71_RS00185 (WOC71_00180) rarA 31750..33024 (-) 1275 WP_406818752.1 replication-associated recombination protein A Machinery gene
  WOC71_RS00190 (WOC71_00185) cymR 33109..33531 (+) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  WOC71_RS00195 (WOC71_00190) - 33631..33813 (+) 183 WP_000752909.1 CsbD family protein -
  WOC71_RS00200 (WOC71_00195) - 33853..33999 (+) 147 WP_000009238.1 SAS049 family protein -
  WOC71_RS00205 (WOC71_00200) - 34236..35249 (-) 1014 WP_000985878.1 LLM class flavin-dependent oxidoreductase -
  WOC71_RS00210 (WOC71_00205) - 35561..36703 (+) 1143 WP_000409157.1 cysteine desulfurase family protein -
  WOC71_RS00215 (WOC71_00210) mnmA 36704..37822 (+) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47221.81 Da        Isoelectric Point: 8.6795

>NTDB_id=878640 WOC71_RS00185 WP_406818752.1 31750..33024(-) (rarA) [Staphylococcus aureus strain TUM22457]
MSTEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKNLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=878640 WOC71_RS00185 WP_406818752.1 31750..33024(-) (rarA) [Staphylococcus aureus strain TUM22457]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAAAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTGTTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATTGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGATGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGCCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGTCAAATTCCAAATCATTTAAAAGATGGACATTATCAAGGTGCTAAAAATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684