Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   REH65_RS08535 Genome accession   NZ_CP134054
Coordinates   1932821..1933624 (+) Length   267 a.a.
NCBI ID   WP_406693125.1    Uniprot ID   -
Organism   Saccharopolyspora sp. ID03-671     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1927821..1938624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  REH65_RS08525 (REH65_08495) - 1930004..1931785 (+) 1782 WP_406692014.1 ABC transporter ATP-binding protein -
  REH65_RS08530 (REH65_08500) - 1931769..1932718 (+) 950 Protein_1700 ABC transporter ATP-binding protein -
  REH65_RS08535 (REH65_08505) rcrQ 1932821..1933624 (+) 804 WP_406693125.1 ABC transporter ATP-binding protein Regulator
  REH65_RS08540 (REH65_08510) - 1933727..1934533 (+) 807 WP_406692015.1 thioesterase II family protein -
  REH65_RS08545 (REH65_08515) - 1934526..1934933 (+) 408 WP_406692016.1 DoxX family protein -
  REH65_RS08550 (REH65_08520) - 1934946..1937741 (-) 2796 WP_406692017.1 AAA family ATPase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29262.24 Da        Isoelectric Point: 5.3974

>NTDB_id=878447 REH65_RS08535 WP_406693125.1 1932821..1933624(+) (rcrQ) [Saccharopolyspora sp. ID03-671]
MASARRIFEVLDEPEQRPAPPRPVRPGRVRGRVEFQRVDFRYEAHAPLIEDLTLTAVPGQLIAIVGPTGAGKSTLGNLLL
RFYEVDEGKILLDDVDVATMTREDLRSQIGLVSQDSWLFSGTIADNIAYGRPGATRQEVVDAARAMCVDRFVRSLPDGYD
TVLDDESSAVSAGERQLITLARAFLAGPSILLLDEATSSVDSRTEVLIQQAMASLRAGRTSFVIAHRLSTIRHADLILVM
DSGRVVERGTHHELLEAGGHYARLYTA

Nucleotide


Download         Length: 804 bp        

>NTDB_id=878447 REH65_RS08535 WP_406693125.1 1932821..1933624(+) (rcrQ) [Saccharopolyspora sp. ID03-671]
ATGGCCTCCGCCCGGCGGATCTTCGAGGTCCTCGACGAACCCGAGCAGCGGCCCGCGCCACCCCGACCGGTGCGGCCGGG
CCGGGTGCGCGGGCGGGTGGAGTTCCAGCGGGTCGACTTCCGCTACGAGGCGCACGCGCCGCTGATCGAGGACCTGACGC
TGACCGCCGTGCCGGGGCAGCTCATCGCGATCGTCGGCCCGACCGGGGCGGGCAAGTCGACCCTGGGCAACCTCCTGCTG
CGGTTCTACGAGGTCGACGAGGGCAAGATCCTGCTCGACGACGTCGACGTCGCCACCATGACCCGCGAGGACCTGCGGTC
CCAGATCGGCCTGGTCTCGCAGGACTCCTGGCTGTTCTCCGGCACCATCGCCGACAACATCGCCTACGGACGGCCCGGCG
CGACCCGCCAGGAGGTCGTCGACGCGGCCCGGGCGATGTGCGTCGACCGCTTCGTGCGCTCGCTGCCCGACGGCTACGAC
ACCGTCCTCGACGACGAGTCGTCGGCCGTCAGCGCGGGTGAGCGCCAGCTCATCACGCTGGCCCGGGCGTTCCTCGCCGG
TCCGTCGATCCTGCTGCTCGACGAGGCCACCAGCTCCGTTGACTCCCGCACCGAGGTCCTCATCCAGCAGGCGATGGCCT
CGCTGCGCGCCGGGCGCACCAGCTTCGTCATCGCCCACCGGCTGTCGACCATCCGCCACGCCGACCTGATCCTGGTCATG
GACTCCGGCCGGGTCGTCGAGCGCGGCACCCACCACGAGCTCCTCGAGGCCGGTGGCCACTACGCCCGGCTGTACACGGC
CTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(50-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.128

99.625

0.509
  rcrP Streptococcus mutans UA159

35.793

100

0.363