Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RGB73_RS10735 Genome accession   NZ_CP134050
Coordinates   2162475..2164736 (+) Length   753 a.a.
NCBI ID   WP_310771740.1    Uniprot ID   -
Organism   Brevibacillus brevis strain NEB573     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2157475..2169736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGB73_RS10710 (RGB73_10710) - 2158061..2158816 (+) 756 WP_310771732.1 tRNA threonylcarbamoyladenosine dehydratase -
  RGB73_RS10715 (RGB73_10715) - 2158823..2160184 (+) 1362 WP_310771734.1 AAA family ATPase -
  RGB73_RS10720 (RGB73_10720) - 2160200..2160373 (-) 174 WP_310771736.1 hypothetical protein -
  RGB73_RS10725 (RGB73_10725) cymR 2160471..2160890 (+) 420 WP_203356448.1 cysteine metabolism transcriptional regulator CymR -
  RGB73_RS10730 (RGB73_10730) - 2160995..2162137 (+) 1143 WP_310771738.1 cysteine desulfurase family protein -
  RGB73_RS10735 (RGB73_10735) recD2 2162475..2164736 (+) 2262 WP_310771740.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RGB73_RS10740 (RGB73_10740) - 2164817..2165296 (+) 480 WP_310771742.1 PRC-barrel domain-containing protein -
  RGB73_RS10745 (RGB73_10745) - 2165332..2165538 (+) 207 WP_310771743.1 hypothetical protein -
  RGB73_RS10750 (RGB73_10750) - 2165575..2165769 (+) 195 WP_396136208.1 hypothetical protein -
  RGB73_RS10755 (RGB73_10755) - 2165955..2166641 (-) 687 WP_310771746.1 TerC family protein -
  RGB73_RS10760 (RGB73_10760) - 2167008..2168072 (+) 1065 WP_310771748.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 84933.87 Da        Isoelectric Point: 5.3407

>NTDB_id=878411 RGB73_RS10735 WP_310771740.1 2162475..2164736(+) (recD2) [Brevibacillus brevis strain NEB573]
MEEQQSISLFAETFIRGFVAQEIFYNEETWYGVIRLKIEETTESIKDSEVVIVGNFPRPHPDELYTFYGDWKTHARFGQQ
YVARRYERETPKTIAGVERYLASGLFQGIGKKMAKRIVEHLGVDALTIIADHPERLAEVPGISESRAKIIYDSVIEHRSL
ESAMVFLYDFGIGVNMALRIYQTYKLETMTVLKEEPYRLIEDIQGIGFKRADDIARSTGIAASSEERVKAAALFTLQEAS
YSEGHVYLPVDELCEKTKRLLDECGGHAFSGEEITQAVEALFIASKVAWEDDRVYLPSLFFAELGLAKRLRHFASRDQFG
SFPASEFYRAIGAVEDELAITYAQTQRDAIEQAITSGLMLLTGGPGTGKTTVIRGICRVFAQLHGLSLDLRKYGEDNPFP
IVLVAPTGRAAKRMTETTGLPAMTIHRLLGYKGESFEHDAEHPIRGRLLIIDEMSMVDIWLANQLFRAVPDDMQIIMVGD
PDQLPSVGPGNVLQDMIRSGLIPLVQLTEIYRQAEESTIIRLAHDVRKGHVPADLLHTTPDRRFFTSSPQDVPEAVKQIC
SGAVKKGYTAKDVQVLAPMYKGNAGVNRLNEELQELFNPKTAQKRQVTFGETVFRTGDKVLQLVNNAEEQVFNGDMGEIV
AIFFPNENAENEEMLVASFDGREVTYKRSAYHQLTLAYCCSVHKSQGSEFPIVVMPFVKSYYRMLRRKLVYTGITRSKSF
LIMCGEPDAFRAAVETDEEGVRYSYLEERLRQE

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=878411 RGB73_RS10735 WP_310771740.1 2162475..2164736(+) (recD2) [Brevibacillus brevis strain NEB573]
ATGGAGGAGCAACAATCGATCTCCCTGTTTGCCGAGACATTTATTCGCGGCTTTGTGGCGCAAGAAATTTTTTACAATGA
AGAAACGTGGTACGGAGTGATCCGTCTAAAAATAGAAGAGACCACCGAGTCCATCAAGGATTCGGAGGTGGTGATCGTCG
GCAACTTCCCCCGCCCTCACCCTGATGAGCTGTACACCTTTTACGGAGACTGGAAGACGCATGCCCGCTTCGGCCAGCAG
TACGTCGCCCGTCGCTACGAACGGGAGACGCCGAAAACCATCGCAGGTGTCGAACGTTATTTGGCGAGCGGGCTGTTCCA
GGGCATCGGCAAAAAAATGGCGAAGCGCATTGTCGAGCATCTAGGCGTGGATGCGTTGACGATCATAGCCGATCATCCGG
AACGTCTGGCAGAAGTGCCTGGCATATCCGAATCGCGTGCGAAGATCATTTACGACTCGGTGATTGAGCATCGTTCGTTG
GAGAGCGCGATGGTGTTTTTGTACGATTTCGGCATCGGCGTGAATATGGCATTGCGCATCTATCAGACGTACAAGCTGGA
GACGATGACCGTCCTGAAGGAAGAACCGTACAGGCTGATCGAGGATATCCAAGGAATCGGGTTTAAGCGGGCAGACGATA
TTGCTCGTTCTACCGGGATCGCTGCTTCCTCCGAAGAGAGGGTCAAGGCGGCTGCCTTGTTTACCTTGCAGGAGGCATCC
TATTCGGAAGGGCACGTGTATTTGCCGGTCGACGAGCTGTGCGAAAAAACGAAACGGCTGCTGGATGAATGCGGCGGCCA
CGCATTTTCCGGCGAGGAAATCACGCAGGCGGTCGAAGCCTTGTTCATCGCCAGCAAGGTCGCCTGGGAAGACGATCGGG
TTTATTTGCCTTCCTTGTTTTTCGCAGAGCTCGGACTGGCGAAAAGGCTGCGGCACTTTGCGAGCAGAGACCAATTCGGT
TCCTTTCCCGCTTCCGAATTTTACAGAGCGATCGGCGCGGTCGAGGACGAGCTGGCGATCACGTACGCCCAGACTCAGCG
CGATGCAATCGAACAGGCGATCACGTCCGGGCTGATGCTCCTCACCGGGGGGCCCGGAACCGGAAAGACCACAGTCATCA
GGGGGATCTGCCGGGTGTTCGCGCAGCTTCACGGCTTATCTCTCGATCTGAGAAAGTACGGAGAAGACAATCCGTTTCCC
ATTGTGCTGGTCGCTCCGACAGGGCGTGCAGCGAAGCGAATGACGGAGACGACGGGACTGCCTGCCATGACGATCCACCG
GCTGCTCGGCTACAAGGGGGAGAGCTTCGAGCATGATGCGGAGCACCCGATCCGTGGACGCCTCCTGATCATCGACGAGA
TGTCCATGGTTGATATTTGGCTGGCCAATCAGCTCTTTCGGGCCGTTCCGGACGACATGCAGATCATCATGGTCGGAGAT
CCGGATCAGCTCCCTTCCGTTGGCCCTGGCAATGTACTCCAGGATATGATCCGCTCCGGTCTGATTCCGCTCGTTCAGCT
GACGGAAATTTACCGGCAAGCTGAAGAATCCACGATCATTCGCCTGGCGCATGACGTTCGCAAGGGACACGTCCCCGCAG
ATTTGCTCCATACGACACCGGATCGGCGATTTTTCACAAGTTCGCCACAAGATGTTCCGGAAGCGGTGAAACAAATTTGC
TCGGGAGCCGTAAAGAAAGGATATACGGCAAAAGATGTACAAGTTCTGGCCCCTATGTATAAAGGAAATGCCGGTGTGAA
CCGGCTGAACGAAGAATTGCAGGAGCTGTTCAATCCGAAGACGGCCCAAAAGCGGCAGGTCACGTTCGGGGAGACGGTTT
TCCGCACGGGCGACAAAGTCCTGCAATTGGTAAACAATGCCGAAGAACAGGTGTTCAACGGCGACATGGGTGAGATCGTC
GCCATCTTTTTCCCGAACGAAAACGCAGAGAACGAAGAGATGCTGGTCGCCTCCTTCGACGGCCGGGAAGTGACGTATAA
ACGCTCGGCGTACCATCAGCTGACGCTGGCGTACTGTTGCTCCGTCCATAAATCGCAAGGAAGTGAATTTCCAATCGTGG
TCATGCCGTTTGTGAAAAGCTATTACCGCATGCTCCGGCGCAAGCTGGTGTACACAGGGATTACCCGAAGCAAGTCTTTC
CTCATCATGTGCGGCGAACCGGACGCGTTTCGCGCGGCCGTGGAGACGGATGAAGAGGGTGTGCGGTACAGCTATCTGGA
AGAGCGGCTCAGGCAGGAGTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-723)

Helix-hairpin-helix domain (HHH_5)

(107-151)

AAA domain (AAA_30)

(342-536)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-656)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.465

99.336

0.491