Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RGB74_RS10780 Genome accession   NZ_CP134049
Coordinates   2190335..2191114 (-) Length   259 a.a.
NCBI ID   WP_310261701.1    Uniprot ID   -
Organism   Bacillus sp. NEB1478     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2185335..2196114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGB74_RS10755 (RGB74_10755) fliG 2185904..2186917 (-) 1014 WP_310759317.1 flagellar motor switch protein FliG -
  RGB74_RS10760 (RGB74_10760) fliF 2186931..2188523 (-) 1593 WP_310759318.1 flagellar basal-body MS-ring/collar protein FliF -
  RGB74_RS10765 (RGB74_10765) fliE 2188601..2188900 (-) 300 WP_310759319.1 flagellar hook-basal body complex protein FliE -
  RGB74_RS10770 (RGB74_10770) flgC 2188913..2189362 (-) 450 WP_310759320.1 flagellar basal body rod protein FlgC -
  RGB74_RS10775 (RGB74_10775) flgB 2189365..2189727 (-) 363 WP_310762843.1 flagellar basal body rod protein FlgB -
  RGB74_RS10780 (RGB74_10780) codY 2190335..2191114 (-) 780 WP_310261701.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RGB74_RS10785 (RGB74_10785) hslU 2191139..2192533 (-) 1395 WP_310759321.1 HslU--HslV peptidase ATPase subunit -
  RGB74_RS10790 (RGB74_10790) hslV 2192557..2193096 (-) 540 WP_310759322.1 ATP-dependent protease subunit HslV -
  RGB74_RS10795 (RGB74_10795) xerC 2193121..2194023 (-) 903 WP_310762845.1 tyrosine recombinase XerC -
  RGB74_RS10800 (RGB74_10800) trmFO 2194085..2195392 (-) 1308 WP_310759323.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28732.00 Da        Isoelectric Point: 4.7229

>NTDB_id=878378 RGB74_RS10780 WP_310261701.1 2190335..2191114(-) (codY) [Bacillus sp. NEB1478]
MNLLNKARSINSMLQQTGGKQVNFKEMAETLSTVIGANIFVVSRRGKLLGTALKQDIENERMKKMIQDRQFPTEYTKNLF
NITESMANIDVESDYTAFPVENKDLFSTGLTTVVPIVGGGERLGTLILSRLSTSFEEDDLVLAEYGATVVGMEILREKAE
EIEEEARNKAVVQMAISSLSYSELEAIEHIFEELEGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLLELEKLKTS

Nucleotide


Download         Length: 780 bp        

>NTDB_id=878378 RGB74_RS10780 WP_310261701.1 2190335..2191114(-) (codY) [Bacillus sp. NEB1478]
ATGAATTTATTAAACAAAGCAAGAAGCATTAACTCAATGCTACAACAAACAGGTGGTAAGCAAGTAAACTTTAAAGAGAT
GGCTGAAACTTTAAGTACGGTTATCGGTGCTAATATATTTGTAGTAAGCCGACGAGGTAAGCTTTTAGGAACTGCTCTCA
AACAGGATATCGAAAATGAACGCATGAAAAAAATGATTCAAGATCGTCAATTTCCTACAGAATATACTAAAAATCTTTTT
AACATTACTGAATCAATGGCTAACATTGATGTCGAGAGTGACTACACAGCATTCCCTGTTGAAAATAAAGATTTATTTTC
TACAGGTTTAACTACAGTTGTACCAATTGTAGGAGGCGGTGAAAGACTTGGAACATTGATTCTTTCCAGACTATCAACTT
CTTTTGAAGAAGATGATCTAGTTTTAGCGGAATATGGTGCAACGGTAGTAGGAATGGAGATCCTACGTGAAAAGGCTGAA
GAAATTGAAGAAGAAGCGAGAAATAAAGCTGTAGTTCAAATGGCGATCAGTTCACTATCTTATAGTGAACTTGAAGCGAT
TGAACATATTTTTGAAGAACTTGAAGGCAATGAAGGTCTTCTAGTTGCAAGTAAAATTGCAGATCGAGTAGGTATTACGA
GATCTGTGATTGTAAATGCACTTCGTAAATTGGAAAGCGCTGGTGTCATTGAATCTCGCTCACTAGGAATGAAAGGTACT
TACATTAAAGTATTAAATGATAAATTCCTGCTGGAGCTTGAAAAATTAAAAACTTCTTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.783

99.614

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.583

95.367

0.463