Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RGB74_RS06485 Genome accession   NZ_CP134049
Coordinates   1357524..1359845 (+) Length   773 a.a.
NCBI ID   WP_310762171.1    Uniprot ID   -
Organism   Bacillus sp. NEB1478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1352524..1364845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGB74_RS06460 (RGB74_06460) - 1353165..1353875 (+) 711 WP_310762166.1 YitT family protein -
  RGB74_RS06465 (RGB74_06465) cymR 1353808..1354227 (+) 420 WP_310762167.1 cysteine metabolism transcriptional regulator CymR -
  RGB74_RS06470 (RGB74_06470) - 1354243..1355382 (+) 1140 WP_310762168.1 cysteine desulfurase family protein -
  RGB74_RS06475 (RGB74_06475) mnmA 1355424..1356551 (+) 1128 WP_310762169.1 tRNA 2-thiouridine(34) synthase MnmA -
  RGB74_RS06480 (RGB74_06480) - 1356844..1357509 (+) 666 WP_396136053.1 tetratricopeptide repeat protein -
  RGB74_RS06485 (RGB74_06485) recD2 1357524..1359845 (+) 2322 WP_310762171.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RGB74_RS06490 (RGB74_06490) - 1359995..1360192 (+) 198 WP_310762172.1 hypothetical protein -
  RGB74_RS06495 (RGB74_06495) - 1360223..1360393 (+) 171 WP_310762173.1 DUF3918 family protein -
  RGB74_RS06500 (RGB74_06500) - 1360447..1361529 (+) 1083 WP_310762175.1 AI-2E family transporter -
  RGB74_RS06505 (RGB74_06505) alaS 1361841..1364477 (+) 2637 WP_310762176.1 alanine--tRNA ligase -
  RGB74_RS06510 (RGB74_06510) - 1364556..1364831 (+) 276 WP_310762177.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 773 a.a.        Molecular weight: 88013.68 Da        Isoelectric Point: 6.1035

>NTDB_id=878368 RGB74_RS06485 WP_310762171.1 1357524..1359845(+) (recD2) [Bacillus sp. NEB1478]
MAQQPSFHLQDETSGFIKGTLISTVFHQAESLYTVARIRVRETNENYDEKEVMITGILPPLREDEQYVLYGKFKDHPKYG
KQYEVHFFKIEMPQSKEAMIQYLSSDLFKGIGKKTAEHIVDVLGDNAITKLIESPDYISDIPKLTEDQAKNLYEALLENR
GLDQVMMTVQPYGIGPQLAMKIFQTYQDKAVSVIKNEPYRLIEDVPGIGFHRADEIAKGNGMQVNHPERIQAACHFILRE
HGTDLGHSYLPIDELLSGVRKLLADGKNTVDEMSVFREIQDMETEKRLILKENVVYLPSLFYAEKGFAEKINHLLTSQDS
DYDIPKKQIDIELTNLEKRLNITYANSQKEAIKKALTSSVMILTGGPGTGKTTVIKGIVELYSEIHGVSLNPDDYRNKKE
PFPVLLVAPTGRAAKRMMESTGIPAHTIHRLLGWRGAGHFEKNEDEPIEGKLLIVDEMSMVDIWLAYSLGKALPEHIQII
FVGDEDQLPSVGPGQVLKDLLSSPHIPNSRLTDIYRQAEGSSIVRLAHDMKNGTVPKDLLKPQADRRFFPSSGENVFQVI
MQVCENAIKKGYTSRDIQVLAPMYKGPLGIDRLNMELQRLFNPEKVKQRQLQVGQAFYRKGDKVLQLVNQPEDHVFNGDI
GEIAAIIYAKENTDKEDQIVISFDEIEVTYKRNEFHHFTHAFCCSIHKSQGSEYPIVILPIVKSYYRMLKRNLIYTAITR
SKEYLILCGEEEAFSWAISRSDESERYSGLKHRLKESLLEKDLLNDSLFEETN

Nucleotide


Download         Length: 2322 bp        

>NTDB_id=878368 RGB74_RS06485 WP_310762171.1 1357524..1359845(+) (recD2) [Bacillus sp. NEB1478]
ATGGCACAGCAGCCTTCCTTTCACTTACAGGATGAAACTTCTGGATTTATTAAAGGGACGTTGATCTCAACTGTCTTTCA
TCAGGCAGAAAGCTTATATACGGTTGCTCGGATTAGAGTTAGAGAGACAAACGAAAATTATGATGAAAAAGAAGTCATGA
TCACAGGCATACTTCCTCCATTAAGAGAGGATGAACAATACGTGCTTTATGGAAAGTTTAAAGACCATCCGAAGTACGGT
AAACAATATGAAGTTCATTTTTTCAAAATAGAAATGCCGCAATCAAAAGAAGCGATGATTCAATACTTATCAAGTGATCT
GTTTAAAGGCATCGGTAAAAAGACTGCCGAGCATATTGTTGATGTCCTCGGTGATAATGCGATTACAAAACTCATTGAAT
CACCGGATTATATTAGCGACATTCCGAAATTGACTGAAGATCAGGCAAAGAATCTGTATGAAGCATTGCTTGAAAACAGA
GGATTAGACCAGGTTATGATGACTGTGCAGCCTTATGGTATAGGTCCTCAGCTTGCTATGAAGATTTTTCAAACGTATCA
AGATAAGGCTGTTTCTGTTATTAAGAACGAACCATATCGGCTTATAGAAGATGTTCCGGGAATCGGGTTTCACAGAGCGG
ATGAAATCGCTAAAGGAAACGGAATGCAAGTTAACCATCCAGAGAGGATACAAGCAGCTTGTCATTTTATTTTAAGGGAA
CACGGTACTGATCTTGGTCATTCTTATTTACCGATCGACGAATTGCTTTCAGGTGTAAGGAAATTATTAGCCGACGGAAA
AAATACGGTTGATGAAATGAGCGTCTTCAGAGAAATTCAAGACATGGAGACAGAAAAAAGACTGATATTAAAAGAAAATG
TCGTATATTTACCATCACTATTCTACGCAGAAAAAGGATTCGCAGAAAAAATAAATCACCTGCTCACATCTCAAGATTCA
GATTATGACATACCGAAAAAGCAAATCGATATTGAACTAACCAATTTAGAAAAAAGACTCAACATTACATATGCAAATAG
TCAAAAAGAAGCGATAAAAAAGGCGCTCACATCTTCGGTAATGATTCTTACAGGTGGACCCGGTACAGGTAAGACTACCG
TAATTAAAGGGATCGTTGAGCTATATAGTGAAATTCATGGAGTAAGCCTGAACCCGGATGATTATCGAAACAAAAAGGAA
CCGTTCCCTGTTCTCCTCGTAGCACCTACGGGAAGAGCAGCTAAACGAATGATGGAATCCACAGGTATACCAGCACATAC
GATTCATCGTTTGTTAGGATGGAGAGGTGCGGGGCATTTTGAAAAAAATGAGGATGAACCTATTGAAGGAAAACTGTTAA
TTGTCGATGAAATGTCCATGGTGGACATTTGGCTCGCTTATTCTTTAGGAAAAGCTCTGCCTGAACATATTCAAATCATT
TTCGTAGGAGATGAAGATCAGCTTCCTTCAGTAGGACCAGGGCAGGTCTTAAAAGACTTGTTATCTTCACCACATATACC
AAACTCAAGATTGACTGATATCTACAGACAAGCAGAAGGTTCATCCATTGTTCGGCTTGCACATGATATGAAAAATGGCA
CTGTGCCAAAGGATCTTTTGAAGCCGCAAGCAGACAGGCGGTTTTTTCCCAGCTCTGGAGAAAACGTTTTTCAAGTGATA
ATGCAAGTATGTGAAAATGCAATCAAAAAAGGGTATACTTCCCGGGATATTCAAGTTCTTGCACCTATGTATAAAGGGCC
ACTCGGGATTGACAGGCTAAATATGGAGCTGCAGAGATTATTTAATCCTGAAAAAGTGAAACAGCGCCAATTACAAGTTG
GACAAGCTTTCTACCGGAAAGGTGATAAGGTGCTTCAGCTTGTTAACCAGCCTGAGGACCATGTTTTTAATGGAGACATT
GGGGAAATTGCTGCGATCATTTACGCAAAAGAGAACACGGATAAAGAAGATCAAATCGTGATTAGCTTTGATGAAATTGA
AGTGACGTATAAGCGAAATGAATTTCATCATTTTACACATGCGTTTTGCTGTTCCATTCATAAATCTCAAGGCAGTGAGT
ATCCCATTGTAATTTTGCCAATTGTAAAAAGTTATTACCGCATGCTTAAGCGCAACTTAATCTATACAGCCATCACAAGA
AGCAAAGAATATTTAATCCTTTGCGGTGAAGAAGAAGCATTTTCTTGGGCAATTAGCCGCTCTGATGAATCAGAACGATA
CTCAGGACTGAAGCACCGTCTAAAAGAATCACTATTGGAAAAAGATTTATTGAATGATTCCTTGTTTGAAGAAACAAACT
AG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(344-542)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-663)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.23

100

0.533