Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   RDV49_RS08780 Genome accession   NZ_CP133988
Coordinates   1819628..1820467 (-) Length   279 a.a.
NCBI ID   WP_003006470.1    Uniprot ID   A0AAX4AWH8
Organism   Streptococcus parasanguinis strain B-1756     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1814628..1825467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS08760 (RDV49_08760) - 1815371..1816243 (-) 873 WP_003006480.1 XRE/MutR family transcriptional regulator -
  RDV49_RS08765 (RDV49_08765) - 1816248..1816604 (-) 357 WP_003006477.1 hypothetical protein -
  RDV49_RS08770 (RDV49_08770) - 1816813..1818720 (-) 1908 WP_003006475.1 ABC-F family ATP-binding cassette domain-containing protein -
  RDV49_RS08775 (RDV49_08775) - 1818824..1819546 (-) 723 WP_003006472.1 M57 family metalloprotease -
  RDV49_RS08780 (RDV49_08780) endA 1819628..1820467 (-) 840 WP_003006470.1 DNA/RNA non-specific endonuclease Machinery gene
  RDV49_RS08785 (RDV49_08785) - 1820551..1820739 (-) 189 WP_003006464.1 DNA-directed RNA polymerase subunit beta -
  RDV49_RS08790 (RDV49_08790) murA 1820729..1822012 (-) 1284 WP_003006461.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RDV49_RS08795 (RDV49_08795) - 1822079..1822309 (-) 231 WP_003006458.1 DUF1146 family protein -
  RDV49_RS08800 (RDV49_08800) - 1822407..1822826 (-) 420 WP_003002471.1 F0F1 ATP synthase subunit epsilon -
  RDV49_RS08805 (RDV49_08805) atpD 1822840..1824246 (-) 1407 WP_003006453.1 F0F1 ATP synthase subunit beta -
  RDV49_RS08810 (RDV49_08810) - 1824332..1825213 (-) 882 WP_003006449.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30426.87 Da        Isoelectric Point: 9.6313

>NTDB_id=878173 RDV49_RS08780 WP_003006470.1 1819628..1820467(-) (endA) [Streptococcus parasanguinis strain B-1756]
MAKQTVSKRTKQTLAGFVVATALAIGGYYFNQPTVKEATDRVVSVVTSSQQETPSKELASSVLTKSARSQLGNDLEWNGA
GAFVVKGNRTDLDASVASQPYADNKTKEVNGKTVPTVANAIMTKATRQYRDRDATGSGLTDWKPAGWHQVHHLSGEYDHA
VDRGHLLGYALIGNLKGFDASTSNPKNIAVQTAWSNQANDPHSTGQNYYETLVRKALDKNKRIRYRVTSIYNHPEDLIPL
GSQIEAKSSDGTLEFNVFVPNVQSGISLDYQTGKVTVHQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=878173 RDV49_RS08780 WP_003006470.1 1819628..1820467(-) (endA) [Streptococcus parasanguinis strain B-1756]
ATGGCAAAACAAACAGTAAGCAAACGAACCAAACAAACCCTAGCAGGTTTTGTGGTGGCAACGGCCCTAGCTATTGGGGG
CTATTATTTTAATCAACCGACGGTAAAAGAAGCGACAGATCGGGTTGTTTCGGTGGTGACTAGTAGCCAACAAGAAACAC
CTAGTAAAGAGTTAGCTAGCTCTGTACTAACGAAATCTGCCCGTTCACAATTAGGGAATGACTTGGAATGGAATGGTGCT
GGAGCCTTTGTAGTTAAGGGAAATCGAACAGATCTAGATGCCAGTGTGGCTAGTCAACCCTATGCGGATAACAAGACAAA
AGAAGTGAATGGAAAGACCGTACCGACGGTTGCGAACGCTATTATGACCAAGGCGACTCGCCAGTACAGAGATCGAGATG
CAACAGGTAGTGGCCTAACCGATTGGAAACCAGCAGGTTGGCATCAGGTCCATCATCTGTCAGGCGAGTATGACCATGCT
GTGGATCGGGGCCACCTATTGGGCTATGCCTTGATCGGTAATCTCAAAGGTTTCGATGCTTCGACGAGCAATCCCAAAAA
TATCGCTGTACAAACGGCTTGGTCCAATCAAGCCAATGACCCTCATTCCACCGGTCAAAACTACTATGAGACCCTGGTCC
GAAAAGCACTGGATAAGAACAAGCGGATCCGCTATCGGGTCACCTCGATCTACAACCATCCAGAAGATCTGATTCCATTA
GGATCACAGATCGAAGCCAAATCGAGTGATGGGACCCTTGAGTTCAATGTCTTTGTTCCCAATGTTCAAAGTGGGATTAG
CCTGGATTATCAGACAGGAAAAGTAACCGTTCATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

63.043

98.925

0.624
  endA Streptococcus pneumoniae D39

63.043

98.925

0.624
  endA Streptococcus pneumoniae R6

63.043

98.925

0.624
  endA Streptococcus pneumoniae TIGR4

63.043

98.925

0.624