Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QQE96_RS20080 Genome accession   NZ_CP133987
Coordinates   3148212..3148916 (+) Length   234 a.a.
NCBI ID   WP_168523661.1    Uniprot ID   -
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3143212..3153916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS20060 (QQE96_20110) greB 3143708..3144187 (+) 480 WP_053312224.1 transcription elongation factor GreB -
  QQE96_RS20065 (QQE96_20115) - 3144272..3146599 (+) 2328 WP_168523659.1 Tex family protein -
  QQE96_RS20070 (QQE96_20120) - 3146719..3147189 (-) 471 WP_053312226.1 hypothetical protein -
  QQE96_RS20075 (QQE96_20125) bioH 3147350..3148123 (-) 774 WP_168524085.1 pimeloyl-ACP methyl ester esterase BioH -
  QQE96_RS20080 (QQE96_20130) comF 3148212..3148916 (+) 705 WP_168523661.1 ComF family protein Machinery gene
  QQE96_RS20085 (QQE96_20135) nfuA 3149018..3149605 (+) 588 WP_053312228.1 Fe-S biogenesis protein NfuA -
  QQE96_RS20090 (QQE96_20140) nudE 3149768..3150313 (+) 546 WP_168523663.1 ADP compounds hydrolase NudE -
  QQE96_RS20095 (QQE96_20145) cysQ 3150338..3151165 (+) 828 WP_168524087.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QQE96_RS20100 (QQE96_20150) - 3151210..3151968 (-) 759 WP_168523665.1 type II secretion system protein N -
  QQE96_RS20105 (QQE96_20155) - 3151969..3152463 (-) 495 WP_053312232.1 type II secretion system protein M -
  QQE96_RS20110 (QQE96_20160) gspL 3152474..3153682 (-) 1209 WP_168523667.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26927.40 Da        Isoelectric Point: 9.4013

>NTDB_id=878130 QQE96_RS20080 WP_168523661.1 3148212..3148916(+) (comF) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MLSHWLQKTIYRLVSRQCPLCHLPIATHQNSAWCETCLTYFAPQPRCQQCGLPTLLNVPQCGQCLASPPLWHRLYCVGDY
IFPLNHTVHKLKYEGQFWQARNLSALLAPRIDEPAPLITSVPLHWQRRLTRGFNQSELLANQLSRQLINATCDHQLIKRK
RATPQQKGLSKVQRKQNLQHAFALQRKPNQKHIAIVDDVVTTGSTIQQICKLLLEVGVERIDIYCICRTPEPKD

Nucleotide


Download         Length: 705 bp        

>NTDB_id=878130 QQE96_RS20080 WP_168523661.1 3148212..3148916(+) (comF) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATGTTATCGCATTGGCTTCAAAAAACCATCTATCGCTTAGTCAGCAGGCAATGCCCACTTTGCCACCTACCGATCGCTAC
ACACCAAAATAGCGCTTGGTGTGAAACCTGTTTGACCTACTTTGCTCCCCAGCCTCGTTGTCAACAATGTGGCTTGCCGA
CACTGCTTAATGTACCGCAGTGCGGACAATGCTTAGCTAGTCCACCGCTTTGGCATCGTTTGTATTGTGTCGGTGATTAC
ATATTTCCACTCAACCACACCGTTCATAAACTGAAATACGAAGGGCAGTTTTGGCAAGCGCGTAATTTAAGCGCACTTTT
GGCTCCACGAATTGATGAGCCGGCCCCGTTGATAACTAGCGTTCCTCTGCACTGGCAAAGACGCTTAACACGAGGCTTTA
ATCAAAGTGAGTTACTTGCCAACCAATTAAGCAGGCAACTTATTAATGCCACTTGTGATCATCAACTGATAAAACGTAAG
CGCGCCACGCCGCAACAAAAAGGATTATCTAAGGTGCAGCGTAAACAAAACCTACAACATGCCTTTGCACTACAACGCAA
ACCAAATCAGAAACATATCGCAATTGTTGACGATGTTGTCACCACAGGCAGTACCATCCAACAGATCTGTAAATTACTGC
TTGAAGTTGGCGTCGAAAGGATTGATATTTATTGCATCTGCCGCACTCCTGAACCAAAAGATTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(137-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

59.829

100

0.598
  comF Vibrio campbellii strain DS40M4

50.209

100

0.513