Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RIM74_RS08230 Genome accession   NZ_CP133955
Coordinates   1724078..1724803 (-) Length   241 a.a.
NCBI ID   WP_012678429.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain HTP133     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1719078..1729803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM74_RS08205 (RIM74_08205) rimP 1719679..1720161 (-) 483 WP_042356782.1 ribosome maturation factor RimP -
  RIM74_RS08215 (RIM74_08215) trmB 1721551..1722186 (-) 636 WP_012679098.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RIM74_RS08220 (RIM74_08220) ccrZ 1722186..1722977 (-) 792 WP_012515084.1 cell cycle regulator CcrZ -
  RIM74_RS08225 (RIM74_08225) - 1723040..1724074 (-) 1035 WP_012679097.1 ABC transporter permease -
  RIM74_RS08230 (RIM74_08230) pptA 1724078..1724803 (-) 726 WP_012678429.1 ABC transporter ATP-binding protein Regulator
  RIM74_RS08235 (RIM74_08235) - 1725340..1725693 (+) 354 WP_076521445.1 hypothetical protein -
  RIM74_RS08240 (RIM74_08240) - 1726146..1726565 (+) 420 WP_012679095.1 HIT family protein -
  RIM74_RS08245 (RIM74_08245) - 1726562..1726858 (+) 297 WP_317582793.1 chemotaxis protein -
  RIM74_RS08250 (RIM74_08250) brpA 1727028..1728290 (-) 1263 WP_012679093.1 biofilm formation/cell division transcriptional regulator BrpA -
  RIM74_RS08255 (RIM74_08255) - 1728291..1728818 (-) 528 WP_317582794.1 GNAT family N-acetyltransferase -
  RIM74_RS08260 (RIM74_08260) tsaE 1728811..1729254 (-) 444 WP_012679091.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26506.80 Da        Isoelectric Point: 4.8615

>NTDB_id=877878 RIM74_RS08230 WP_012678429.1 1724078..1724803(-) (pptA) [Streptococcus equi subsp. equi strain HTP133]
MLNIENVTGGYLNIPVLKDISFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYKGRISIDGLTLAEHEADYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAHKRAEPFLELFRLTDKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAIADLIKALEVEKAKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLADLQAVFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=877878 RIM74_RS08230 WP_012678429.1 1724078..1724803(-) (pptA) [Streptococcus equi subsp. equi strain HTP133]
ATGTTAAACATTGAGAATGTCACTGGAGGCTACCTTAATATTCCAGTTTTGAAGGATATTAGCTTTTCTGTCGGAAATGG
AGAGCTAGTAGGGCTTATTGGTCTAAATGGTGCTGGTAAGTCAACAACGATTAATGAAATTATTGGGTTTTTAAAGCCAT
ATAAGGGAAGGATTTCCATTGATGGCTTAACCTTGGCGGAGCATGAAGCTGATTATCGCAAGAAAATTGGCTTTATCCCA
GAAACACCAAGCCTGTATGAGGAGCTGACCTTAGCAGAGCATATCAATACGGTAGCTATGGCCTATGATATTGATGTGGA
GCTGGCACATAAGCGAGCTGAGCCCTTCTTAGAGCTGTTTCGTTTGACGGATAAGCTGGATTGGTTTCCGGTGCATTTTT
CTAAGGGAATGAAGCAAAAGGTTATGATTATTTGCGCTTTTGTCATTGACCCTAGTCTTTTTATTCTTGATGAGCCCTTT
TTGGGGCTTGACCCCTTAGCAATTGCTGATTTGATTAAGGCTTTAGAGGTTGAAAAGGCAAAGGGCAAGTCAATTCTAAT
GAGTACCCATGTGCTGGATTCGGCAGAAAAAATGTGTGACCGTTTTGTGATATTGCATCAGGGACAGGTGCGTGCACAAG
GGACTCTGGCGGATTTGCAGGCAGTCTTTGGAGATGCTTCAGCTAGTCTTAATGACATTTACCTAGCGCTGACAAAAGAG
GGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.477

99.17

0.739
  pptA Streptococcus thermophilus LMD-9

73.64

99.17

0.73