Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   RIM74_RS04980 Genome accession   NZ_CP133955
Coordinates   1003957..1005267 (+) Length   436 a.a.
NCBI ID   WP_317583051.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain HTP133     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 998957..1010267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM74_RS04965 (RIM74_04965) phoU 999447..1000100 (+) 654 WP_012678018.1 phosphate signaling complex protein PhoU -
  RIM74_RS04970 (RIM74_04970) - 1000334..1002871 (+) 2538 WP_012679477.1 M1 family metallopeptidase -
  RIM74_RS04975 (RIM74_04975) ciaR 1003290..1003964 (+) 675 WP_012515548.1 response regulator transcription factor Regulator
  RIM74_RS04980 (RIM74_04980) ciaH 1003957..1005267 (+) 1311 WP_317583051.1 HAMP domain-containing sensor histidine kinase Regulator
  RIM74_RS04985 (RIM74_04985) - 1005652..1006071 (+) 420 WP_012679479.1 hypothetical protein -
  RIM74_RS04990 (RIM74_04990) - 1006068..1007261 (+) 1194 WP_317583052.1 hypothetical protein -
  RIM74_RS04995 (RIM74_04995) - 1007258..1007650 (+) 393 WP_012679481.1 hypothetical protein -
  RIM74_RS05000 (RIM74_05000) - 1007669..1007953 (+) 285 WP_012679482.1 hypothetical protein -
  RIM74_RS05005 (RIM74_05005) rpsT 1008152..1008400 (-) 249 WP_012679483.1 30S ribosomal protein S20 -
  RIM74_RS05010 (RIM74_05010) coaA 1008454..1009374 (-) 921 WP_012679484.1 type I pantothenate kinase -
  RIM74_RS05015 (RIM74_05015) - 1009641..1010237 (+) 597 WP_021320719.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 49517.16 Da        Isoelectric Point: 9.5549

>NTDB_id=877869 RIM74_RS04980 WP_317583051.1 1003957..1005267(+) (ciaH) [Streptococcus equi subsp. equi strain HTP133]
MNKLKKGLLSDNYTHFFHFFAIFTGIFVVMTIIILQIMRFSVYSTVDSSLISVGQNASNYANRTMARISSFYFDAENNLI
QALPELEASKSLGSSTTNMDIILFSANGTILNSFDAFSNYQSFRLDKSQLNNIVTTQLMNFYGQKEKYHTLTVKVHIKNY
PAVAYMMAVVNVQQLDTANERYEQIIIMVMIVFWLISILASIYLAKWSRKPIMESYAKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILDNSEHIASSLDEVRNMRILTTNLLNLARSDDGIKPQLVDVDAAFFDTVFENYQLVAEESGKQFISVN
QINRPLKTDKALLKQLMTILFDNAIKYTDHNGVVEVKVRTTDKHLLISVIDNGPGIKDDDKKKIFDRFYRVDKARARQKG
GFGLGLALAQQIVTSLKGTITVSDNKPTGAIFEIKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=877869 RIM74_RS04980 WP_317583051.1 1003957..1005267(+) (ciaH) [Streptococcus equi subsp. equi strain HTP133]
ATGAATAAACTAAAAAAAGGATTATTGTCCGATAATTATACGCATTTTTTTCATTTCTTTGCTATTTTTACAGGCATTTT
TGTTGTCATGACCATCATTATTTTACAAATCATGAGGTTTAGTGTCTATTCCACAGTAGACAGCAGTCTCATTTCGGTCG
GTCAAAATGCCAGCAACTATGCTAATAGGACCATGGCGAGAATATCTTCCTTTTATTTTGATGCAGAAAATAACCTTATT
CAGGCTCTTCCTGAACTGGAAGCGTCAAAATCACTTGGCTCCTCCACCACTAATATGGATATTATTTTATTTAGTGCTAA
TGGGACGATATTGAACTCCTTTGACGCTTTCTCTAATTACCAAAGCTTTCGTTTAGACAAAAGCCAGCTCAATAACATTG
TCACCACACAGCTGATGAATTTTTATGGGCAAAAGGAGAAATACCATACCCTAACCGTTAAGGTTCACATTAAAAACTAT
CCAGCAGTGGCTTATATGATGGCAGTGGTTAATGTTCAGCAGCTGGATACTGCTAATGAGCGCTATGAACAGATTATTAT
CATGGTTATGATTGTCTTTTGGTTAATTTCGATTTTGGCCAGTATTTATTTGGCTAAGTGGAGCAGAAAGCCAATTATGG
AGAGCTATGCCAAGCAAAAAATGTTTGTAGAAAATGCCAGTCATGAGCTTAGGACTCCTTTAGCGGTGCTGCAAAATCGT
TTGGAATCGCTGTTTAGAAAGCCTAACGAAACCATTTTAGACAATAGCGAGCATATTGCGTCAAGCCTAGATGAGGTTCG
TAATATGAGAATATTAACAACTAATCTGTTAAATTTAGCCAGAAGTGATGATGGGATCAAGCCGCAGCTAGTTGATGTTG
ATGCAGCCTTTTTTGATACTGTTTTTGAAAATTATCAATTAGTTGCAGAAGAGTCAGGCAAGCAGTTTATCTCAGTTAAT
CAGATCAATAGGCCCTTAAAGACGGATAAGGCTTTGCTCAAGCAGCTGATGACCATTTTGTTTGATAATGCGATCAAATA
CACTGATCATAACGGTGTGGTTGAGGTCAAGGTTAGAACGACCGATAAGCATTTATTGATTTCTGTTATTGATAATGGCC
CAGGGATCAAGGATGATGATAAGAAAAAGATTTTTGATCGCTTTTACCGAGTGGATAAGGCAAGGGCACGCCAAAAAGGA
GGGTTTGGACTCGGATTGGCCTTAGCGCAGCAGATCGTTACCTCATTAAAAGGAACGATTACCGTCAGTGATAATAAGCC
TACCGGCGCCATCTTTGAAATAAAATTATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(220-285)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(329-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.437

100

0.576
  ciaH Streptococcus pneumoniae Rx1

50.688

100

0.507
  ciaH Streptococcus pneumoniae D39

50.688

100

0.507
  ciaH Streptococcus pneumoniae R6

50.688

100

0.507
  ciaH Streptococcus pneumoniae TIGR4

50.688

100

0.507