Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   RIM74_RS04380 Genome accession   NZ_CP133955
Coordinates   870610..871488 (+) Length   292 a.a.
NCBI ID   WP_317583037.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain HTP133     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 865610..876488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM74_RS04355 (RIM74_04355) - 866826..867242 (+) 417 WP_012679393.1 F0F1 ATP synthase subunit epsilon -
  RIM74_RS04360 (RIM74_04360) - 867405..868756 (+) 1352 WP_173477526.1 IS3 family transposase -
  RIM74_RS04365 (RIM74_04365) - 868815..869051 (+) 237 WP_012678109.1 DUF1146 family protein -
  RIM74_RS04370 (RIM74_04370) murA 869115..870386 (+) 1272 WP_012679395.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RIM74_RS04375 (RIM74_04375) - 870390..870578 (+) 189 WP_012679396.1 DNA-directed RNA polymerase subunit beta -
  RIM74_RS04380 (RIM74_04380) endA 870610..871488 (+) 879 WP_317583037.1 DNA/RNA non-specific endonuclease Machinery gene
  RIM74_RS04385 (RIM74_04385) - 871502..871660 (+) 159 WP_014622728.1 hypothetical protein -
  RIM74_RS04390 (RIM74_04390) pheS 872400..873443 (+) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  RIM74_RS04395 (RIM74_04395) - 873454..873639 (+) 186 WP_037584122.1 hypothetical protein -
  RIM74_RS04400 (RIM74_04400) pheT 873633..876038 (+) 2406 WP_012679398.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31838.97 Da        Isoelectric Point: 10.2312

>NTDB_id=877867 RIM74_RS04380 WP_317583037.1 870610..871488(+) (endA) [Streptococcus equi subsp. equi strain HTP133]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRILGSDTQQAGLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGVYIINHNKTTLNAKVASLPYANNKTKMVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRKALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=877867 RIM74_RS04380 WP_317583037.1 870610..871488(+) (endA) [Streptococcus equi subsp. equi strain HTP133]
ATGATCAAAAAGAAGAAAGACATCAGGCTGCTTAATGCCTTTTTAGCGCTCTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAACCCGATCAAGCAGGTCTACCAAAGGATTCTTGGCTCTGACACGCAGCAAGCCG
GGCTACCAAAGGCAAGCCGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACTGGTGTCTATATCATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCTAGTCTCCCCTATGCCAATAATAAAACAAAGATGGTACAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCTAGTAATATCGCTACTCAAACCGCATGGGCTAACCAAGCAGCTAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAAAGCCCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCTTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(100-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.257

77.397

0.521
  endA Streptococcus pneumoniae D39

67.257

77.397

0.521
  endA Streptococcus pneumoniae R6

67.257

77.397

0.521
  endA Streptococcus pneumoniae TIGR4

67.257

77.397

0.521