Detailed information NTG0877749

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: RIM63_RS01550
• Genome accession: NZ_CP133952
• Coordinates: 302256..303191 (+)
• Length: 311 a.a.
• NCBI ID: WP_021320349.1
• Uniprot ID: A0A922NTU6
• Organism: Streptococcus equi subsp. zooepidemicus strain HT321
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 297256..308191

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIM63_RS01530 (RIM63_01530)	-	297416..299074 (+)	1659	WP_317584475.1	peptide ABC transporter substrate-binding protein	-
RIM63_RS01535 (RIM63_01535)	-	299243..300157 (+)	915	WP_012514937.1	ABC transporter permease	-
RIM63_RS01540 (RIM63_01540)	-	300167..301198 (+)	1032	WP_317584477.1	ABC transporter permease	-
RIM63_RS01545 (RIM63_01545)	oppD	301210..302256 (+)	1047	WP_154804144.1	ABC transporter ATP-binding protein	Regulator
RIM63_RS01550 (RIM63_01550)	amiF	302256..303191 (+)	936	WP_021320349.1	ABC transporter ATP-binding protein	Regulator
RIM63_RS01555 (RIM63_01555)	rnjA	303783..305465 (-)	1683	WP_012514941.1	ribonuclease J1	-
RIM63_RS01560 (RIM63_01560)	-	305467..305697 (-)	231	WP_012678542.1	DNA-dependent RNA polymerase subunit epsilon	-
RIM63_RS01565 (RIM63_01565)	tsaB	305983..306681 (+)	699	WP_014622280.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
RIM63_RS01570 (RIM63_01570)	rimI	306684..307109 (+)	426	WP_037583996.1	ribosomal protein S18-alanine N-acetyltransferase	-
RIM63_RS01575 (RIM63_01575)	tsaD	307099..308115 (+)	1017	WP_043052712.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35013.13 Da
• Isoelectric Point: 8.3807

>NTDB_id=877749 RIM63_RS01550 WP_021320349.1 302256..303191(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain HT321]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEADQYRAERGL

Nucleotide

• Length: 936 bp

>NTDB_id=877749 RIM63_RS01550 WP_021320349.1 302256..303191(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAAGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACAA
CAGTTGGTCGAGCTATTTTGAAATTGTATGATATTAGTGATGGCGAGATTATCTTTAATGGAGAAAACGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCGCAAATGATCTTCCAAGATCCTCAGGCTAGTCTCAACGGTCGCAT
GAAAATCAGAGATATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AAGAGCTGTTAAAGCTTGTTGGGCTTAATCAGGATCATTTGACGCGGTACCCACATGAATTTTCTGGTGGCCAACGCCAG
CGGATTGGCATTGCGCGTGCCCTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAGAAGCGCGGCTTGACCTATCTCTTTATCGCACACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGAACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGTATTGCAGAGGTTTATGATCCTAGCCAGGAGCTAGATGGCCAAGAGCGACAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACGCAGGCCGAAGCCGATCAGTACCGAGCAGAGCGTGGCCTCTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.248	98.392	0.534
amiF	Streptococcus thermophilus LMG 18311	53.922	98.392	0.531
amiF	Streptococcus salivarius strain HSISS4	53.595	98.392	0.527