Detailed information NTG0877728

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: RIM64_RS09105
• Genome accession: NZ_CP133951
• Coordinates: 1906826..1907761 (-)
• Length: 311 a.a.
• NCBI ID: WP_012678543.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain JMC111
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1901826..1912761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIM64_RS09080 (RIM64_09080)	tsaD	1901875..1902891 (-)	1017	WP_012678539.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
RIM64_RS09085 (RIM64_09085)	rimI	1902881..1903306 (-)	426	WP_111692167.1	ribosomal protein S18-alanine N-acetyltransferase	-
RIM64_RS09090 (RIM64_09090)	tsaB	1903309..1904007 (-)	699	WP_043029338.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
RIM64_RS09095 (RIM64_09095)	-	1904293..1904523 (+)	231	WP_012678542.1	DNA-dependent RNA polymerase subunit epsilon	-
RIM64_RS09100 (RIM64_09100)	rnjA	1904525..1906207 (+)	1683	WP_043025155.1	ribonuclease J1	-
RIM64_RS09105 (RIM64_09105)	amiF	1906826..1907761 (-)	936	WP_012678543.1	ABC transporter ATP-binding protein	Regulator
RIM64_RS09110 (RIM64_09110)	oppD	1907761..1908807 (-)	1047	WP_042670018.1	ABC transporter ATP-binding protein	Regulator
RIM64_RS09115 (RIM64_09115)	-	1908820..1909851 (-)	1032	WP_012678545.1	ABC transporter permease	-
RIM64_RS09120 (RIM64_09120)	-	1909861..1910775 (-)	915	WP_012678546.1	ABC transporter permease	-
RIM64_RS09125 (RIM64_09125)	-	1910942..1912600 (-)	1659	WP_012514936.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35027.15 Da
• Isoelectric Point: 8.3807

>NTDB_id=877728 RIM64_RS09105 WP_012678543.1 1906826..1907761(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEAEQYRAERGL

Nucleotide

• Length: 936 bp

>NTDB_id=877728 RIM64_RS09105 WP_012678543.1 1906826..1907761(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain JMC111]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACGA
CAGTTGGTCGAGCTATTTTGAAACTGTATGACATTAGTGATGGTGAGATTATCTTTAACGGAGAAAATGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCACAAATGATCTTCCAAGATCCTCAGGCTAGTCTGAACGGCCGTAT
GAAAATTAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AGGAGCTGTTAAAGCTTGTTGGGCTCAATCAGGACCATTTGACGCGGTACCCACATGAATTTTCCGGTGGTCAACGCCAG
CGCATTGGCATTGCGCGTGCCTTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAAAAGCGTGGCTTGACCTATCTCTTTATCGCTCACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGGACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGTATTGCAGAGGTTTATGATCCTAGCCAGGAGCTAGATGGCCAAGAGCGACAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACTCAGGCCGAAGCCGAGCAGTACCGAGCAGAGCGTGGCCTTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.575	98.392	0.537
amiF	Streptococcus thermophilus LMG 18311	54.248	98.392	0.534
amiF	Streptococcus salivarius strain HSISS4	53.922	98.392	0.531